Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0249 ATGGTGGATCCAACTGGAAAAGGATCGGAGGTTGAAGTTGAGGACTCAAACTCAAACCCTAACGCTCCTTCCTCAGGGAACAGTCCGAGCAGCAACAATGAGCAGAAGAAAACCTGCGCCGATTGCGGCACCACCAAGACCCCTCTCTGGAGGGGTGGTCCTGCAGGACCTAAGTCTCTGTGCAACGCGTGCGGGATCAGAAGCAGGAAGAAGAAGAGAGCGATCCTGGGAATCAACAAGGGGAGCACCGAGGACGGAAGGAAAGGAAAGAGGACCGGCGGAGGCGGCGGAATTGGCGGAATTGGCGGTGGCGCGTTGGGGAGGGAAGTGTTGTTGCACCGATCGCATTGGAAGAAGCTAGGAGAGGAAGAGAAAGCTGCGGTGTTGTTGATGTCGCTCTCTTATGGATCCGTTTATGCCTGA 423 0.5556 MVDPTGKGSEVEVEDSNSNPNAPSSGNSPSSNNEQKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRAILGINKGSTEDGRKGKRTGGGGGIGGIGGGALGREVLLHRSHWKKLGEEEKAAVLLMSLSYGSVYA* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0249 140 ProSitePatterns GATA-type zinc finger domain. 39 64 IPR000679 GO:0006355|GO:0043565
Gso17g0249 140 PANTHER OS01G0976800 PROTEIN 1 91 - -
Gso17g0249 140 PANTHER OS01G0976800 PROTEIN 106 140 - -
Gso17g0249 140 MobiDBLite consensus disorder prediction 75 100 - -
Gso17g0249 140 SMART GATA_3 33 84 IPR000679 GO:0006355|GO:0043565
Gso17g0249 140 Pfam GATA zinc finger 39 73 IPR000679 GO:0006355|GO:0043565
Gso17g0249 140 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 33 73 - -
Gso17g0249 140 MobiDBLite consensus disorder prediction 11 42 - -
Gso17g0249 140 Gene3D - 30 119 IPR013088 GO:0006355|GO:0008270
Gso17g0249 140 MobiDBLite consensus disorder prediction 1 54 - -
Gso17g0249 140 CDD ZnF_GATA 38 73 IPR000679 GO:0006355|GO:0043565
Gso17g0249 140 ProSiteProfiles GATA-type zinc finger domain profile. 33 69 IPR000679 GO:0006355|GO:0043565
Gso17g0249 140 PANTHER OS01G0976800 PROTEIN 1 91 - -
Gso17g0249 140 PANTHER OS01G0976800 PROTEIN 106 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0249 Gso-Chr17 2265220 2266412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0249 1 140 C2C2-Gata Transcription Factor Family AT5G49300 51.020 1.02e-37 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Gso17g0249 GATA 6.2e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0249 - - gmx:100789636 232.646
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0249 17 2265220 2266412 Gso17g0249 17 2265220 2266412 ECH
Gso17g0249 17 2265220 2266412 Gso19g1938 19 48069696 48070470 ECH
Gso7g2052 7 44483101 44484091 Gso17g0249 17 2265220 2266412 GST