Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0246 ATGAATCTCAGCAACGGAAAGGGATCCATGTCAACGCTTACTGCAAGCGTCGTTATGAAATCCGGCGACGCCGTCTCCGACCAGTTTCCGGCGGGTCTCCGGGTTCTCGTGGTGGACGATGACCCCACGTGTCTCATGATTCTTGAGAAGATGCTCCGCACGTGCCTCTACGAAGTTACCAAATGCAATCGAGCAGAAACTGCTCTCTCACTGCTTAGAGAGAACAAAAATGGGTTTGACATTGTTATAAGCGATGTGCATATGCCGGACATGGATGGATTTAAACTTTTGGAGCACATTGGGTTAGAGATGGACCTTCCTGTTATCATGATGTCTGCGGATGATGGTAAAAGTGTTGTTATGAAGGGCGTGACTCATGGTGCTTGTGATTACTTAATTAAGCCTGTTCGCATTGAGGCTTTGAAGAACATATGGCAGCACGTGGTTCGGAAGAGGAAGAATGAGTGGAAAGATGCCGAGCAATCAGGCAGTGCCGAAGAAGGAGATCGCCATCCAAAGGCTTCTGATGAAGCAGATTACTCTTCATCGGCGAATGAAGGCAGTTGGAGAAACTCCAAGAAGAGAAGGGATGAGGAAGAGGAGGCAGAGGATAGGGATGACACATCCACGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTGGAGCTCCATCAACAGTTTGTGGCTGCTGTGGATCAACTGGGAATTGACAAGGCTGTTCCTAAAAAAATTCTGGAATTGATGAATGTTCCTGGGCTCACTAGAGAAAATGTTGCCAGCCACCTGCAGAAATACCGATTGTATCTTCGAAGGTTGAGTGGAGTGTCTCAGCACCAGAATAACTTGAACAACTCCTTTCTCGGCCCCCAAGAGGCAACATTTGGGACAATTTCTTCAATTAATGGGATTGATCTTCAAACTCTTGCAGTCGCTGGCCAGCTCCCAGCACAAAGTCTAGCCACACTTCAAGCAGCAGGACTTGGTAGGTCGACTGCAAAAGCTGGTGTACCTATTCCTCTCATGGATCAAAGAAATCTTTTCAGTTTTGAAAACCCAAGGTTAAGATTTGGAGAAGGCCAGCCACAACATTTAAGCACTAGTAAACCAATGAACTTGTTGCATGGAATCCCTACCAACATGGAACCAAAGCAGCTTGCCAATTTGCACCAGTCTACCCAATCCATTGGCGGCTTGAATATGCGAGTCAATGCTTCTGCTACACAAGGCAACCCCATATTGATGCAGATGGCACAATCCCAACCTAGAGGTCAGATGCTTAGTGAAAATACTGGTCCTCGTGTTCCAAGACTTCCATCATCTTTGGGGCAGCCTACTGTATCAAATGGAATTTCTAATGGTCTTCTGGGCAGAAATGGGATTGCGGGTAATAACAGAGGACCTGCATATAATCCTGTTCCACCGAGCTCTTCATTGTTGAGTTTTCCTATGAATCAAACCTCTGAAATGTCTGTCAACAATAGTTTCCCAATTGGAACCACCCCAGGTATATCAAGTATCACAACAAAAGGCTCTTTTCAAGAAGAAGTTACATCAGGAATTAAAGGATCCAGTGGGTTTCCAAGTTATGATATTTTTAATGAACTGCATCATCAGAAGTCCCATGATTTGGAGATAACAAACCCAGGCTTGACATACAATGCCTCCCATCATGTAAACCCTTTACAAGGTAACATTGATGTTGCACCATCAGTTTTAGTGCATCAAGGGTTTTCTTCTACACAACAGACCGGCCAAAGCAGAGATGGCGCTTTGATTGGAAAAGCTATGTTCTCCATGGGAGAAGGCTTGGAACAAAATAACCTCCAAAATGCTAACTTCAATCCACTTCTTGTTGACAATTCAATAAGGATCAAGGCTGAAAGAATTCCTGATGCAAGCTCCCAGACTAATCTCTTCCCTGAGCATTATGGGCAGGAGGATCTGATGACTGCACTTCTAAAACAGCAAGAAGGCATGGGACCAGCTGAGAATGAGTTTGAATTTGATGGATATTCTCTAGACAACATTCCTGTCTAG 2034 0.4503 MNLSNGKGSMSTLTASVVMKSGDAVSDQFPAGLRVLVVDDDPTCLMILEKMLRTCLYEVTKCNRAETALSLLRENKNGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKSVVMKGVTHGACDYLIKPVRIEALKNIWQHVVRKRKNEWKDAEQSGSAEEGDRHPKASDEADYSSSANEGSWRNSKKRRDEEEEAEDRDDTSTLKKPRVVWSVELHQQFVAAVDQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQNNLNNSFLGPQEATFGTISSINGIDLQTLAVAGQLPAQSLATLQAAGLGRSTAKAGVPIPLMDQRNLFSFENPRLRFGEGQPQHLSTSKPMNLLHGIPTNMEPKQLANLHQSTQSIGGLNMRVNASATQGNPILMQMAQSQPRGQMLSENTGPRVPRLPSSLGQPTVSNGISNGLLGRNGIAGNNRGPAYNPVPPSSSLLSFPMNQTSEMSVNNSFPIGTTPGISSITTKGSFQEEVTSGIKGSSGFPSYDIFNELHHQKSHDLEITNPGLTYNASHHVNPLQGNIDVAPSVLVHQGFSSTQQTGQSRDGALIGKAMFSMGEGLEQNNLQNANFNPLLVDNSIRIKAERIPDASSQTNLFPEHYGQEDLMTALLKQQEGMGPAENEFEFDGYSLDNIPV* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0246 677 CDD REC_typeB_ARR-like 35 149 - -
Gso17g0246 677 MobiDBLite consensus disorder prediction 189 210 - -
Gso17g0246 677 SMART REC_2 33 145 IPR001789 GO:0000160
Gso17g0246 677 MobiDBLite consensus disorder prediction 156 177 - -
Gso17g0246 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 649 - -
Gso17g0246 677 SUPERFAMILY Homeodomain-like 210 270 IPR009057 -
Gso17g0246 677 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 269 IPR017930 -
Gso17g0246 677 Gene3D - 210 272 - -
Gso17g0246 677 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 213 266 IPR006447 GO:0003677
Gso17g0246 677 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Gso17g0246 677 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 649 IPR045279 GO:0009736
Gso17g0246 677 MobiDBLite consensus disorder prediction 156 210 - -
Gso17g0246 677 PIRSF RR_ARR_type-B 13 669 IPR017053 GO:0003677|GO:0003700|GO:0009736
Gso17g0246 677 Pfam Response regulator receiver domain 35 143 IPR001789 GO:0000160
Gso17g0246 677 Pfam Myb-like DNA-binding domain 215 265 IPR001005 -
Gso17g0246 677 SUPERFAMILY CheY-like 32 156 IPR011006 -
Gso17g0246 677 Gene3D - 33 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0246 Gso-Chr17 2240286 2244522 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0246 68 677 Response Regulator Gene Family AT3G16857 50.154 0.0 533
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Gso17g0246 Response_reg 6.1e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0246 - K14491 gmx:100781102 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0246 17 2240286 2244522 Gso17g0246 17 2240286 2244522 ECH
Gso7g2055 7 44502646 44506940 Gso17g0246 17 2240286 2244522 GST
Gso17g0246 17 2240286 2244522 Gso15g1204 15 12023119 12028185 PCT
Gso17g0246 17 2240286 2244522 Gso9g0338 9 3281640 3285382 PCT
Gso15g1204 15 12023119 12028185 Gso17g0246 17 2240286 2244522 PCT
Gso9g0338 9 3281640 3285382 Gso17g0246 17 2240286 2244522 PCT