Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0238 ATGGCTTCAACGGACGTCAGAGACATTTTGACAGCTTTCAATCCTTCACTCGACTTCTTCGCTATTACCGCCGGAGACGGTCGCGTCAAGATATGGGACACACTGAGGGGTCAGGTCCACACCGAGTTCGCCGATATTACCTCAACTCATTCAACTGCTACTACTTTACATCATAAATCATCCATTAACGGCCATCTTGCGCTAGATTATACTTGCATCAAGTGGTTCTCCTTCGACAAAAAGAGGAAAAGGAAGCATATATCCTCCTTGTTAGTGCTTGGAACTGGTGGCGGTGATGTTTTAGCACTTGACATCGCTTCTGGTCAATTGACTTGGAGACTTACTGACTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAATGTGTCAACCATTTATACGGCTGGTGCAGATGGGATGGTATGTTTGATAGATTTCATGACAGGAAACCTGTTGGAGAAATTTAAAGCTTCTACAAAGCCAGTATCCTGCATGTCTGTTTCTCCAGATGGGAAGACATTAGCTACTGCAGCAGCACAATTGAAGATTTTTAACTGTTCTAATCACAAAAAGATTCAAAAGTTCTCTGGTCATCCTGGATCTGTTCGATGCATGGTTTTCACTGAAGATGGGAAGCATATCCTCTCATCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGATAGAGGGTGCTAAAAAGCAGTCAGCTAGTTGTGTTCTTGCGATGGAGCACCCTGCTGTCTTTCTTGATAGCAGGTGCATTGATAGTGAGGAACATGATGAGGCTGGCATATGTGTTTTGGCAATCTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTGTCGAAGAACTGCGTAATGCAAAACCCACTAAAATATCCTTATCTTTAGAAGATGTGCCCTCCAGAAACTACAAGGGAGCTCTGCCTGCAATATATGCTGCAAAATTACAAGGCATCCAGAAGCCAGCCTCTGGGCAAGTTTTTCTTGTTTATGGGTTGCTTGTAAAACCATCATTTAGAAAAATTCTTGTGCATTCTGGTGCGGACATAAAGTTGAATGTCTCTCATGATGGTGTTCTTCTTCCAATGAGTCAATCTCTTGGCAAATCTAAGAAGGGGACAAATGCTCAAACAGTAACTGCACTAGACCGAGCTAATGCTGAGGATGCCTTGCTTCCAATTCCTAAGGTTTTTGATTCTCATGAGAAAGAGAAAGCATTTCAAAAATCTCTGGACAAGGATGTAATTGATGATTTGCATAGAAGTAGTAAAGATGATTCTGTTGAGATGGAAGATGATATGGCACAAAGTGAGATTGATGTAATTTGCATGGAGGACCGGATGAGATCACTAGGGATGATTTCCAGTGAAAGTGTGTATGCATCAAACATTGAACTTTGCTGTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTGTTCCAATGAAAAAGATAAGAGCAGCTGTTTTGTCTATGAAGTCAACCAAAGCAGGGAAGCTACTGGAAGTGTTACTGGCTGCATGGGAATCAAGATCATCTAGTGGAAAGTATATTCTTCCATGGATATACAGCATATTAGTGAATCATGATCTCAGTGGCATTCCTCAGCAATATGTGACACGTACACTCAATTCCTTAGACAAGATTACCAATTTTAGAGGGGCAACTCATCAGCCTTTGTTACAATTATCAGGTCGTCTGCAACTGCTGACATCACAGATTGACAAGGCTTCTCAGACTATAAGCCATTCTGTGCATGAACTCCAAATGCAAGAAAGTGAAGATGAAGATGAAGTTGAAGTTGAAGATGAATATTATCACGAGGAAGATGATTCTTCTGAAATAAGTACTGATGATGAAAGCTAG 1881 0.4136 MASTDVRDILTAFNPSLDFFAITAGDGRVKIWDTLRGQVHTEFADITSTHSTATTLHHKSSINGHLALDYTCIKWFSFDKKRKRKHISSLLVLGTGGGDVLALDIASGQLTWRLTDCHPGGVRAIASSANVSTIYTAGADGMVCLIDFMTGNLLEKFKASTKPVSCMSVSPDGKTLATAAAQLKIFNCSNHKKIQKFSGHPGSVRCMVFTEDGKHILSSAVGERYVAVWRIEGAKKQSASCVLAMEHPAVFLDSRCIDSEEHDEAGICVLAISEIGICYLWFGNSVEELRNAKPTKISLSLEDVPSRNYKGALPAIYAAKLQGIQKPASGQVFLVYGLLVKPSFRKILVHSGADIKLNVSHDGVLLPMSQSLGKSKKGTNAQTVTALDRANAEDALLPIPKVFDSHEKEKAFQKSLDKDVIDDLHRSSKDDSVEMEDDMAQSEIDVICMEDRMRSLGMISSESVYASNIELCCKLLKGIDLEATVPMKKIRAAVLSMKSTKAGKLLEVLLAAWESRSSSGKYILPWIYSILVNHDLSGIPQQYVTRTLNSLDKITNFRGATHQPLLQLSGRLQLLTSQIDKASQTISHSVHELQMQESEDEDEVEVEDEYYHEEDDSSEISTDDES* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0238 626 Pfam WD domain, G-beta repeat 10 33 IPR001680 GO:0005515
Gso17g0238 626 Pfam WD domain, G-beta repeat 193 229 IPR001680 GO:0005515
Gso17g0238 626 PANTHER OS03G0300300 PROTEIN 1 625 - -
Gso17g0238 626 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 12 233 IPR011047 -
Gso17g0238 626 MobiDBLite consensus disorder prediction 596 626 - -
Gso17g0238 626 PANTHER OS03G0300300 PROTEIN 1 625 - -
Gso17g0238 626 ProSiteProfiles Trp-Asp (WD) repeats profile. 197 239 IPR001680 GO:0005515
Gso17g0238 626 MobiDBLite consensus disorder prediction 591 626 - -
Gso17g0238 626 SMART WD40_4 2 33 IPR001680 GO:0005515
Gso17g0238 626 SMART WD40_4 107 147 IPR001680 GO:0005515
Gso17g0238 626 SMART WD40_4 190 230 IPR001680 GO:0005515
Gso17g0238 626 SMART WD40_4 150 187 IPR001680 GO:0005515
Gso17g0238 626 Gene3D - 7 302 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0238 Gso-Chr17 2184805 2192099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0238 118 229 U-box Gene Family AT2G33340 29.310 3.45e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0238 K14546 - gmx:100784148 1154.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0238 17 2184805 2192099 Gso17g0238 17 2184805 2192099 ECH
Gso7g2062 7 44562741 44574909 Gso17g0238 17 2184805 2192099 GST