Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0235 ATGGGGAGAATGGGAAAAGAATCAGACTCCAAGACCAAGTTGGTATTAGAGATTTGCTCCATTTCCACGCGTTCTGTGCTCTGTGTTCATCATACACTTCTCTCAAAACCTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTGAATGCCATTCGCAAGAGGTACCATAAACTGGCCTTACAAGTTCACCCAGATAAGAATAAGCATCCCAATGCTGAAATTGCTTTCAAGCTCGTTTCTGAGGCATATGCATGTCTATCTAATGCAGCAAAGAGAAAAGCCTTTGACTTGGAGAGATGTAAGCATTTTTGCTTCGAGTGCAAAAGAATACCATATACATCGAGCAATGTCCCTGGCAATTCAAGTGGGTCAGTTTTCAAGGCATGGAATATGATCACCAGATCAAGATCTTTTAAACTTTGGAGAAATATTAGGGACATGAGAGAAAGATTCATGGACGAGGCTAAGGTGATAGAGAACTGTTTGCGAACAAATTCAATGTCAAGGAAAGAATCTCCACCCTATGATTCGGCTGGCTTTCTACATAGAAGCAAGTCAATGCATAGATTCGAGAAAGAAACCCCAGTTTTCAACCCATCGGATTACTTGTACCAAGGCTACCCTCATCTAAGGAGCAATATTTACAAGAATTCTTCAACATTTTGGTACTTGCAGAGAAATAGTATGCTTCACAACGAAAAGGGAGGAGCGTTGCATGCCTCCCCAGTTTTTGATGTCAAATCAAGGAATTTGTTTGCCAGCAAATTCACTTTTGTCCCATCAAAATGTTAG 807 0.4089 MGRMGKESDSKTKLVLEICSISTRSVLCVHHTLLSKPFIDWYCILGVEENAGVNAIRKRYHKLALQVHPDKNKHPNAEIAFKLVSEAYACLSNAAKRKAFDLERCKHFCFECKRIPYTSSNVPGNSSGSVFKAWNMITRSRSFKLWRNIRDMRERFMDEAKVIENCLRTNSMSRKESPPYDSAGFLHRSKSMHRFEKETPVFNPSDYLYQGYPHLRSNIYKNSSTFWYLQRNSMLHNEKGGALHASPVFDVKSRNLFASKFTFVPSKC* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0235 268 CDD DnaJ 40 93 IPR001623 -
Gso17g0235 268 ProSitePatterns Nt-dnaJ domain signature. 81 100 IPR018253 -
Gso17g0235 268 Pfam DnaJ domain 40 101 IPR001623 -
Gso17g0235 268 PRINTS DnaJ domain signature 42 60 IPR001623 -
Gso17g0235 268 PRINTS DnaJ domain signature 60 75 IPR001623 -
Gso17g0235 268 PRINTS DnaJ domain signature 76 96 IPR001623 -
Gso17g0235 268 PANTHER BNAC03G44070D PROTEIN 7 255 - -
Gso17g0235 268 Gene3D DnaJ domain 39 161 IPR036869 -
Gso17g0235 268 ProSiteProfiles dnaJ domain profile. 40 104 IPR001623 -
Gso17g0235 268 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 7 255 - -
Gso17g0235 268 SMART dnaj_3 39 96 IPR001623 -
Gso17g0235 268 SUPERFAMILY Chaperone J-domain 29 103 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0235 Gso-Chr17 2164170 2165679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0235 11 101 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 36.275 4.40e-10 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0235 - - gmx:100801809 555.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0235 17 2164170 2165679 Gso17g0235 17 2164170 2165679 ECH
Gso7g2066 7 44593640 44595017 Gso17g0235 17 2164170 2165679 GST
Gso17g0235 17 2164170 2165679 Gso15g1219 15 12179441 12181001 PCT
Gso17g0235 17 2164170 2165679 Gso9g0350 9 3383323 3384942 PCT
Gso15g1219 15 12179441 12181001 Gso17g0235 17 2164170 2165679 PCT
Gso9g0350 9 3383323 3384942 Gso17g0235 17 2164170 2165679 PCT