Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0228 ATGAAGAATGGACTCGACACCACCCATGAGAAGAAGAAGAGGAAGCTCGCCATTCTGAGCGTGTCTTCCCTCCTCCTGGTGGCGATGGTGGTCGCGGCGGCCGTCGGCATAAGAGAAGGCGCCGATGTGGTCGAGGAAGGCGGCGACTCGATCGTGAAATCTCAAAGGAACGTGCAAGTGATATGCGAATCCGCGGAATACAAAGAAACATGCCACAAGAGTCTCGCCAAAGCTTCCGAAACTTCCGATCTGAAGGAGCTCATCATAACCGCGTTCAACGCCACGGCCGAAGAGATCGCAAAGCAAATAAAAAACTCGACGCTCTACCACGAACTTGCCACCGACGACATGAACAAACAGGCCATGGACATCTGCAAGGAAGTTCTAGGTTACGCTGTCGATGACATGCACCAATCCGTTCGCAAGTTGGAAGAGTTTGAACTAAACAAGTTGAACGATTACGCCTATGATCTCAAGGTCTGGATCGCCGGTACTCTCGCTCACCAACAGACATGTTTGGATGGGTTCGAGAACACGACCAACGAGGCTGGCAAGACCATGGCTAGGGTTCTCAACACTTCTTTGGAGCTCAGCAACAACGCATTGGACATAGTGAACGGTGTATCGAATCTCTTCAAGGGTCTTAACTTGAGTTCCTTCAGCAACAACAACAACAGGAAGCTTCTATCGGAGGTAGATGGGTTCCCTACGTGGGTGAGTGAAGGACAGAGGAGGCTTCTTCAGGCTGCGGACGCCAAAGCGGACGTTGTTGTGGCTCAGGATGGGAGTGGACAGGTGAAGACAATTCACGAGGCTCTTAAATTGGTGCCTAAAAAGAACAAGAAGCCTTTTGTCATTTACGTCAAGGCCGGTGTCTACCAGGAGTATATTATGATCAACAAGCACTTGACCCATGTCACCATGATCGGAGATGGCCCCACCAAGACCAGAATCACCGGCAGCAAAAACTACGTCGATGGCATCAAAACTTACAACACCGCTACCTTCGGTGTGAACGCTGCTAACTTCATGGCGATGAACATCGGGTTCGAGAACACAGCAGGAGCTGAGAAGCACCAAGCCGTTGCCCTGAGGGTAACAGCAGACAAGGCTGTATTCTACAACTGCAACATGGATGGGTTCCAGGACACCCTCTACACACAATCCCAGCGTCAGTTCTACCGCGACTGCACCGTCACGGGCACCATCGACTTCGTGTTCGGCGACGCCGTGGCCGTGTTCCAGAACTGCAAGTTCATCGTAAGGAAGCCCATGGAGAACCAGCAATGCATGGTCACCGCCGGTGGAAGGACCAAGATCGACAGCCCCAGTGCACTGGTCTTCCAGAGCTGCATCTTCACCGGCGAACCCGACGTGTTTGCCTTGTCCCCCAAGATTGCTTACTTGGGAAGGCCGTGGAGGGTTTACGCTAAGGTTGTCATCATGGACTCGCAAATCGATGACATCTTTGTCCCTGAAGGGTACATGCCGTGGATGGGAAGTGCTTTCAAGGACACAAGCACCTACTACGAGTTCAACAACAGGGGTTTTGGTGCTAACACTCAAGGTAGAATCACGTGGCCTGGTTTTAAGGTTATCACTCCCATTGAAGCTACTGATTACTACCCAGGAAAATTCTTTGAGATCGCTAATTCGACTGAGCGTGATTCTTGGATCGTTGGGTCTGGGGTGCCCTACTCCCTTGGCCCAATTATTGCGCTGCCTTTGCCAACAGCTTAA 1740 0.5155 MKNGLDTTHEKKKRKLAILSVSSLLLVAMVVAAAVGIREGADVVEEGGDSIVKSQRNVQVICESAEYKETCHKSLAKASETSDLKELIITAFNATAEEIAKQIKNSTLYHELATDDMNKQAMDICKEVLGYAVDDMHQSVRKLEEFELNKLNDYAYDLKVWIAGTLAHQQTCLDGFENTTNEAGKTMARVLNTSLELSNNALDIVNGVSNLFKGLNLSSFSNNNNRKLLSEVDGFPTWVSEGQRRLLQAADAKADVVVAQDGSGQVKTIHEALKLVPKKNKKPFVIYVKAGVYQEYIMINKHLTHVTMIGDGPTKTRITGSKNYVDGIKTYNTATFGVNAANFMAMNIGFENTAGAEKHQAVALRVTADKAVFYNCNMDGFQDTLYTQSQRQFYRDCTVTGTIDFVFGDAVAVFQNCKFIVRKPMENQQCMVTAGGRTKIDSPSALVFQSCIFTGEPDVFALSPKIAYLGRPWRVYAKVVIMDSQIDDIFVPEGYMPWMGSAFKDTSTYYEFNNRGFGANTQGRITWPGFKVITPIEATDYYPGKFFEIANSTERDSWIVGSGVPYSLGPIIALPLPTA* 580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0228 579 Gene3D - 252 571 IPR012334 -
Gso17g0228 579 SUPERFAMILY Pectin lyase-like 252 547 IPR011050 -
Gso17g0228 579 CDD PMEI-like_3 61 210 - -
Gso17g0228 579 PANTHER PECTINESTERASE 8 573 - -
Gso17g0228 579 PANTHER PECTINESTERASE 8 573 - -
Gso17g0228 579 SMART PMEI_2 53 204 IPR006501 GO:0004857
Gso17g0228 579 Pfam Pectinesterase 255 547 IPR000070 GO:0030599|GO:0042545
Gso17g0228 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 52 209 IPR035513 -
Gso17g0228 579 TIGRFAM PME_inhib: pectinesterase inhibitor domain 53 207 IPR006501 GO:0004857
Gso17g0228 579 ProSitePatterns Pectinesterase signature 1. 280 299 IPR018040 -
Gso17g0228 579 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Gso17g0228 579 Pfam Plant invertase/pectin methylesterase inhibitor 58 204 IPR006501 GO:0004857
Gso17g0228 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 58 207 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0228 Gso-Chr17 2117724 2120475 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0228 1 575 Carbohydrate Esterase AT3G05610 44.539 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0228 K01051 - gmx:100800194 1111.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2075 7 44650040 44652727 Gso17g0228 17 2117724 2120475 GST
Gso17g0228 17 2117724 2120475 Gso9g0359 9 3536749 3539518 PCT
Gso9g0359 9 3536749 3539518 Gso17g0228 17 2117724 2120475 PCT