Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0227 ATGGAAATGGAATCGAAAGACTATGCCTTCAGCGGCAAGATAATGCTAATCGCCATTGTGGTTCTCTTCATCGTTATCATCATAATGCTTTGCCTCCACGTCTACGTCCGGCGGCGCCTCGTAAACGCTCGCCGCCGGCCACAGCTCCGCCGCAGTAACCGCCCGCAGTTCGTGTTCTACATGGACCCCGCCGCCCGCATTGCCCTCACCAGGCGGGGGCTTCACCCCTCCGTGATCTCCACGCTCCCGATGTTCACCTTCTCCGCCACAAACAACCCAACGGAATGCGCGGTTTGTTTATCAGAGTTCGAGAACGGGGAAACGGGTCGGGTATTGCCCAAATGCAATCACAGTTTCCATACTGAGTGCATCGACATGTGGTTTCAGTCTCATGCCACGTGTCCGCTTTGCAGGGAACCCGTAGAGGCTATACCCGAGCGAGAAACCCGATCCGAGGTGGCTGTTATTGTGTGCGACAACGAACCGGTTCGGGAAGAGGTGAACCGGTCTGGACCGGTGGGTGCTTCTTCTTCTCCTTCTGCTGCTTCGTTGCATATTGAGAGCTTGGGGTGCGAGTCTGGGTGTGAGTCGGGATCGTCGTTTCGTTTGCCGGTGAGTCGTATATTGTCGTTTAAGAGGGTTCTGAGTAGAGAGAAGAAAGAAAGCGTCGGGGGAGGATGCAGCTCCATGACCGACTTAGACGTAGAACAACGACGAGAGTGTGACTCGGTGAGTTGA 738 0.5515 MEMESKDYAFSGKIMLIAIVVLFIVIIIMLCLHVYVRRRLVNARRRPQLRRSNRPQFVFYMDPAARIALTRRGLHPSVISTLPMFTFSATNNPTECAVCLSEFENGETGRVLPKCNHSFHTECIDMWFQSHATCPLCREPVEAIPERETRSEVAVIVCDNEPVREEVNRSGPVGASSSPSAASLHIESLGCESGCESGSSFRLPVSRILSFKRVLSREKKESVGGGCSSMTDLDVEQRRECDSVS* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0227 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 143 IPR013083 -
Gso17g0227 245 CDD RING-H2_EL5_like 95 138 - -
Gso17g0227 245 SUPERFAMILY RING/U-box 92 144 - -
Gso17g0227 245 Pfam Ring finger domain 95 138 IPR001841 -
Gso17g0227 245 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 5 206 - -
Gso17g0227 245 ProSiteProfiles Zinc finger RING-type profile. 96 138 IPR001841 -
Gso17g0227 245 PANTHER RING-H2 FINGER PROTEIN ATL64 5 206 - -
Gso17g0227 245 SMART ring_2 96 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0227 Gso-Chr17 2108951 2110006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0227 5 222 Rapid Response to Elicitors AT3G16720 44.223 5.49e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0227 - - gmx:100799137 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0227 17 2108951 2110006 Gso17g0227 17 2108951 2110006 ECH
Gso7g2076 7 44659540 44660579 Gso17g0227 17 2108951 2110006 GST
Gso17g0227 17 2108951 2110006 Gso9g0361 9 3550373 3551709 PCT
Gso9g0361 9 3550373 3551709 Gso17g0227 17 2108951 2110006 PCT