Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0197 ATGATGGATAACGTTGGAGGCAGTTCCTCTAATATTGCTGAAAATAGTGGCATCATCAGGGAACAGGACCGGTTGTTGCCAATAGCCAATGTTGGGAAGATCATGAAGCAGATTCTACCTCCGAACGCAAAAATCTCCAAGGAATCGAAGGAAACAATGCAAGAGTGCGTGTCGGAGTTCATAAGCTTTGTAACCAGCGAGGCGTCGGAGAAGTGCAGGAAGGAAAGGAGGAAGACAGTGAACGGGGATGACATATGCTGGGCCTTGGGGTCGCTTGGTTTTGACGACTATGCAGAGCCATTGAGAAGGTATTTGCAAAGATATAGAGAACAAGAACTAGATAGAGCAAATAACCCCCCCAAAAGAGGATAA 372 0.4624 MMDNVGGSSSNIAENSGIIREQDRLLPIANVGKIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLQRYREQELDRANNPPKRG* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0197 123 PRINTS CCAAT-binding transcription factor subunit A signature 53 71 - -
Gso17g0197 123 PRINTS CCAAT-binding transcription factor subunit A signature 72 90 - -
Gso17g0197 123 PRINTS CCAAT-binding transcription factor subunit A signature 91 109 - -
Gso17g0197 123 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 25 89 IPR003958 -
Gso17g0197 123 ProSitePatterns NF-YB/HAP3 subunit signature. 56 72 IPR003956 GO:0005634|GO:0006355|GO:0043565
Gso17g0197 123 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 118 - -
Gso17g0197 123 SUPERFAMILY Histone-fold 22 117 IPR009072 GO:0046982
Gso17g0197 123 Gene3D Histone, subunit A 14 123 IPR009072 GO:0046982
Gso17g0197 123 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 118 IPR027113 GO:0001228|GO:0006355|GO:0016602
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0197 Gso-Chr17 1850307 1851514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0197 14 123 CCAAT-HAP3 Transcription Factor Family AT2G47810 70.909 3.21e-56 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Gso17g0197 CBFD_NFYB_HMF 4.2e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0197 K08065 - gmx:100794902 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2106 7 44921483 44922485 Gso17g0197 17 1850307 1851514 GST
Gso17g0197 17 1850307 1851514 Gso15g1265 15 12838390 12839067 PCT
Gso17g0197 17 1850307 1851514 Gso9g0400 9 3889254 3891079 PCT
Gso15g1265 15 12838390 12839067 Gso17g0197 17 1850307 1851514 PCT
Gso9g0400 9 3889254 3891079 Gso17g0197 17 1850307 1851514 PCT