Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0191 ATGGAGCGGTACGGGCGGGCCAGCGAAGGGTCGCAGTCTGATCCGTCGCCGGAATGGACTTTGGCCGCCGGCGCCGACGCCGGCCTCGAAGAGTCGTCGTGGCAACTCGGATTAGCCGGTGCTGAATCGTACCCTATGCGTCCCGACGAGGCTGATTGTATCTACTATTTGAGAACGGGATTTTGCGGTTACGGCACACGCTGTCGTTTCAACCATCCTCGAGACCGTGCCGCGGTTATTGGAGCTGCGGCGAGGACTGGAGGGGAGTTTCCAGAGCGCGTGGGACAGCCTGTGTGCCAGTACTTTATGAGGACCGGATTGTGCAAATTTGGTGTGTCCTGCAAGTACCACCATCCTAGGCAGGCGGCAGGCACTGCTACCCCTGTGCCACTAAATTATTATGGGTACCCATTGCGAGTGGCTGAGAAAGAGTGTTCCTATTATGTGAAAACTGGACAGTGCAAGTTTGGTGCAACTTGTAAATTCCACCATCCACAGCCTGCAGGCGTCCAAGCTCTAGCACCATCACCAGTTCCTCCAGTTTCACCTCTGCCTGTACCTGTACCTTCACCAATGTATCCAACTGTACAGATCCCATCTGGTCCTTCACAACAACAATATGGTGTACTTGTTGCAAGACCACCTATGCTACCTGGCTCAGTAGTCCAGGGTCCCTATGGGCCTATGGTAGTGTCCCCTGCCATGGTCCCTTTTTCAGGCTGGAGTCCTTATCAGGCTCCTGCCACAAACCCTGTACTTCCATCTAGCAATACGTCTAATGCTGGTTCAACACAGTTTTATGGGATAAGCCAGCTTCCTTCATCACCAGCTACTTTTACTGGACCTTATCAACCTTCTGGTTCCTCAATTGGTCCTTCAGGTGCTAGCCAGAAGGAGCATCCATTTCCAGAAAGGCCTGATCAACCAGAATGTCATCATTACATGAAAACAGGGGAGTGTAAATTTGGTCTGTCGTGTAGATATCATCATCCACCAGACAAGAGTGCACCAAAAGCAACTGTAACCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATACCCAGCGTGGAGTTTGCAAGTTTGGTTCTGCATGCAAATTTGATCATCCTATGGGATCACTCAGTTATAGTCCATCTGCCTCTTCCTTAGCTGATATGCCAGTGGCACCCTATCCTGTGGGTTCCTCAATTGGTACTCTTGCCCCGTCATCTTCATCATCAGAGTTGCGGCCTGAACTTGGTGCAGGATCCAACAAGGAGTCTGTTGCATCCAGAATGTCTTCAATGAGCACATCAACTGGATCAGTTGGCATGACTTTGTCAAGCGTTGGACCCATTTCTCACTCAAGCACCCAACCATCTGCTCAGAGTTCCAGTTCTCCAGCAACTACCAGTGCTACCACAAGTAGCACTGTCTCTCACACCTCAAGCTAA 1455 0.5127 MERYGRASEGSQSDPSPEWTLAAGADAGLEESSWQLGLAGAESYPMRPDEADCIYYLRTGFCGYGTRCRFNHPRDRAAVIGAAARTGGEFPERVGQPVCQYFMRTGLCKFGVSCKYHHPRQAAGTATPVPLNYYGYPLRVAEKECSYYVKTGQCKFGATCKFHHPQPAGVQALAPSPVPPVSPLPVPVPSPMYPTVQIPSGPSQQQYGVLVARPPMLPGSVVQGPYGPMVVSPAMVPFSGWSPYQAPATNPVLPSSNTSNAGSTQFYGISQLPSSPATFTGPYQPSGSSIGPSGASQKEHPFPERPDQPECHHYMKTGECKFGLSCRYHHPPDKSAPKATVTLSPVGLPLRPGAPPCTHYTQRGVCKFGSACKFDHPMGSLSYSPSASSLADMPVAPYPVGSSIGTLAPSSSSSELRPELGAGSNKESVASRMSSMSTSTGSVGMTLSSVGPISHSSTQPSAQSSSSPATTSATTSSTVSHTSS* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0191 484 ProSiteProfiles Zinc finger C3H1-type profile. 305 333 IPR000571 GO:0046872
Gso17g0191 484 MobiDBLite consensus disorder prediction 277 310 - -
Gso17g0191 484 MobiDBLite consensus disorder prediction 1 20 - -
Gso17g0191 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 74 IPR000571 GO:0046872
Gso17g0191 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Gso17g0191 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 354 378 IPR000571 GO:0046872
Gso17g0191 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 143 166 IPR000571 GO:0046872
Gso17g0191 484 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 307 332 IPR000571 GO:0046872
Gso17g0191 484 SUPERFAMILY CCCH zinc finger 140 167 IPR036855 GO:0046872
Gso17g0191 484 PANTHER PROTEIN PHOSPHATASE RELATED 1 467 - -
Gso17g0191 484 Gene3D - 126 176 - -
Gso17g0191 484 ProSiteProfiles Zinc finger C3H1-type profile. 351 379 IPR000571 GO:0046872
Gso17g0191 484 PANTHER TRANSCRIPTION FACTOR C3H FAMILY-RELATED 1 467 - -
Gso17g0191 484 Gene3D - 294 381 - -
Gso17g0191 484 MobiDBLite consensus disorder prediction 277 295 - -
Gso17g0191 484 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Gso17g0191 484 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Gso17g0191 484 SUPERFAMILY CCCH zinc finger 355 381 IPR036855 GO:0046872
Gso17g0191 484 MobiDBLite consensus disorder prediction 407 484 - -
Gso17g0191 484 SMART c3hfinal6 351 378 IPR000571 GO:0046872
Gso17g0191 484 SMART c3hfinal6 47 74 IPR000571 GO:0046872
Gso17g0191 484 SMART c3hfinal6 305 332 IPR000571 GO:0046872
Gso17g0191 484 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Gso17g0191 484 SMART c3hfinal6 141 166 IPR000571 GO:0046872
Gso17g0191 484 MobiDBLite consensus disorder prediction 427 484 - -
Gso17g0191 484 SUPERFAMILY CCCH zinc finger 308 334 IPR036855 GO:0046872
Gso17g0191 484 SUPERFAMILY CCCH zinc finger 96 121 IPR036855 GO:0046872
Gso17g0191 484 Gene3D - 46 125 - -
Gso17g0191 484 ProSiteProfiles Zinc finger C3H1-type profile. 47 75 IPR000571 GO:0046872
Gso17g0191 484 SUPERFAMILY CCCH zinc finger 48 76 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0191 Gso-Chr17 1772952 1778252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0191 1 440 C2H2 Transcription Factor Family AT5G18550 56.710 7.58e-157 451
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Gso17g0191 zf-CCCH 1.6e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0191 - - gmx:100778426 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0191 17 1772952 1778252 Gso17g0191 17 1772952 1778252 ECH
Gso7g2114 7 45005321 45010485 Gso17g0191 17 1772952 1778252 GST
Gso17g0191 17 1772952 1778252 Gso15g0809 15 7439480 7446782 PCT
Gso17g0191 17 1772952 1778252 Gso11g2460 11 40600689 40607925 PCT
Gso15g0809 15 7439480 7446782 Gso17g0191 17 1772952 1778252 PCT
Gso11g2460 11 40600689 40607925 Gso17g0191 17 1772952 1778252 PCT