Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0190 ATGTCAACCTCGAGAACCTCATCAGATACAGCCTTCAAAGGATATGACCCGAGCCAAACTCAAATGTGTCTGTCTCTCCTTCAACGCAACACATCTCCTTGTGGTGAGAGAAGAGGTAGAAGGAAGCAAGCAGAACCAGGGAGGTTCCTTGGTGTTAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATTAGAGACCCCACAACCAAAGAGAGGCATTGGCTTGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAAGCTAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTCTCCAGCTTTCTCCTATGAATGTTCAAGTTCAACCTCTCTTGCCAGCTTCACAGACGTTCTTCACCAACACCACCACCACCACCACTCAGACCAAAACACCAACCAACCAAAATAGCCTCTCTCAGATTATTCACAGTGCTTCAAACTGTGGAAACCCCTCCCCATTGAACAATGACATGTGTGTTGAAACCACATATGGGTCAGCTCAGGATGACAATTTCTTCTTTTCTAGTGATTCTAACTCGGGCTATCTGGAATGCATAGTTCCTGATAACTGCTTCAGACCTGCTTCATCCAGTTCCAACAGTTCAAACTCCAGAAAGAGCAATGTGAATGATCAAAAGACTAACACAAGCTCCATGGAGAGTACTAATCATCATCATCATCATCAGTTCTCACATGTTGATCACATGACTTCGTTCTCTCAAGAAGAAGGCATTAATGAAATGGCACCAAGGGCCTCTTATAACTTATCAGATTTTTGTTATCAAAGTGAAGTGAGTCAAGGATCATGGGATTGGAATTGCAGTGAACTTTCAGCTATATTTAAGAACCCAATGAGGGTGGAAAATGGGTGCATGGATGATGCATTGTACCCAATAAATGATAGTCCTACTAGTCCAAGCTATGGGCTAATGAATGAGGCTGGTTCTTCTTCTACAACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1065 0.4451 MSTSRTSSDTAFKGYDPSQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTLQLSPMNVQVQPLLPASQTFFTNTTTTTTQTKTPTNQNSLSQIIHSASNCGNPSPLNNDMCVETTYGSAQDDNFFFSSDSNSGYLECIVPDNCFRPASSSSNSSNSRKSNVNDQKTNTSSMESTNHHHHHQFSHVDHMTSFSQEEGINEMAPRASYNLSDFCYQSEVSQGSWDWNCSELSAIFKNPMRVENGCMDDALYPINDSPTSPSYGLMNEAGSSSTTCSPSLPPFGDVDLGYPLF* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0190 354 MobiDBLite consensus disorder prediction 212 235 - -
Gso17g0190 354 Gene3D AP2/ERF domain 48 106 IPR036955 GO:0003700|GO:0006355
Gso17g0190 354 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 PRINTS Ethylene responsive element binding protein signature 71 87 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 Pfam AP2 domain 51 97 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 SUPERFAMILY DNA-binding domain 49 106 IPR016177 GO:0003677
Gso17g0190 354 ProSiteProfiles AP2/ERF domain profile. 48 105 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 354 - -
Gso17g0190 354 SMART rav1_2 48 111 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 MobiDBLite consensus disorder prediction 212 259 - -
Gso17g0190 354 CDD AP2 48 104 IPR001471 GO:0003700|GO:0006355
Gso17g0190 354 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0190 Gso-Chr17 1768217 1769748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0190 1 219 AP2-EREBP Transcription Factor Family AT5G18560 46.038 4.73e-61 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Gso17g0190 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0190 - - gmx:100793333 694.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2115 7 45015375 45016814 Gso17g0190 17 1768217 1769748 GST
Gso17g0190 17 1768217 1769748 Gso15g0810 15 7448978 7450056 PCT
Gso17g0190 17 1768217 1769748 Gso11g2459 11 40597159 40598542 PCT
Gso15g0810 15 7448978 7450056 Gso17g0190 17 1768217 1769748 PCT
Gso11g2459 11 40597159 40598542 Gso17g0190 17 1768217 1769748 PCT