Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0185 ATGGGGAGGCCCTCCAAGACGCAGGTTTCGAACGAATTTTCCTCCGAAGAGGAAAAGGAGGAGGCCTCCGCCGCCGCCGCCAACCACGAGATCGAAGATGACGACGAGGAGCTCGAAGCGGTGGCTCGCTACGTTAGCTCCGATGACGACGATAATTCGCCGGATGAAGCCGCTGAAGACGACGACGAGGATAAACAGGATGAGAGTAATGTTGATCCGGAAGTTAGCAAGCGTGAGAAGGCCAGATTGAGAGAAATGCAACAACTGAAGAAACAGAAAGTTCAGGAGATATTGGATGCACAAAATGCGACCATTGATGCTGATATGAATAATAGAGGAAAGGGCAGATTGAACTATCTCCTACAGCAAACTGAGCTGTTTGCTCATTTTGCCAAGGGTGACCAATCTTCTCAAAAGAAGGCAAAGGGAAGAGGTCGCCATGCATCAAAAGTAACTGAAGAAGAGGAAGATGAAGAATACCTTAAAGGGGAAGAAGATGGCTTAGCAAATACACGGTTGGTGACTCAACCATCATGCATCCAAGGGAAGATGAGGGATTACCAACTTGCTGGGCTAAACTGGCTCATACGATTGTATGAGAATGGCATAAATGGTATTCTGGCAGATGAAATGGGGCTGGGCAAAACATTACAAACAATATCTTTGTTAGGCTACTTACATGAGTTCAGAGGAATAACAGGCCCTCATATGGTGGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTCGGCGCTTTTGCCCTGTTTTACGTGCTGTAAAGTTCCTTGGCAATCCTGACGAAAGGAAGCACATAAGAGAGGAGTTACTCGTTGCTGGTAAGTTTGATGTGTGTGTTACAAGTTTTGAAATGGTAATCAAGGAGAAGTCTGCTTTACGGCGATTTAGTTGGCGCTACATAATTATTGACGAGGCCCATCGAATCAAGAATGAGAACTCACTCTTGTCCAAAACAATGAGGCTATACAATACAAACTATCGACTCCTCATAACTGGCACACCATTACAGAACAATCTTCACGAACTCTGGGCTCTTCTCAACTTTCTTTTGCCTGAAATATTTAGTTCTGCTGAAACTTTTGATGAATGGTTTCAAATCTCTGGTGAAAATGACGAACATGAGGTTGTTCAACAACTACACAAGGTCCTCCGTCCATTCCTCCTTCGAAGGTTGAAGTCAGATGTTGAGAAAGGTTTGCCACCGAAAAAGGAAACCATTCTCAAAGTAGGCATGTCGCAAATGCAGAAACAGTATTATAAGGCATTACTGCAGAAGGATCTGGAGGTTGTGAATGCAGGTGGAGAACGGAAACGTCTCCTAAATATAGCAATGCAACTACGTAAATGCTGCAATCACCCATATCTCTTCCAGGGTGCTGAACCTGGCCCTCCCTTTACAACAGGAGACCATCTCATTACAAATGCTGGTAAAATGGTCCTACTGGATAAGTTACTTCCTAAACTAAAAGAACGTGATTCTAGGGTCCTTATATTTTCACAGATGACTAGGCTGCTAGACATACTTGAAGATTATCTCATGTTTTGTGGATACCAATATTGTCGCATTGATGGCAATACTGGTGGAGATGATCGAGATGCTTCCATTGAGGCTTTCAACAAACCAGGAAGTGAAAAATTTGTCTTCTTGCTATCTACTCGCGCTGGAGGCCTTGGCATTAATCTTGCTACAGCTGATGTTGTTATTCTTTATGACAGTGACTGGAACCCACAAGTTGACCTGCAAGCTCAGGATCGTGCTCATAGGATTGGTCAAAAGAAAGAAGTTCAAGTTTTCCGATTTTGCACTGAGTATACGATTGAGGAAAAAGTCATTGAAAGGGCTTACAAAAAGCTTGCTCTTGATGCTCTGGTGATTCAGCAAGGGCGATTAGCTGAACAGAAGACTGTTAATAAAGATGAGTTGCTTCAAATGGTTAGATTTGGTGCTGAAATGGTTTTTAGTTCCAAGGACAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAGGAAGCAACAGCTGAGCTTGATGCTAAGATGAAAAAATTTACTGAAGATGCTATCAAATTTAAGATGGATGACACTGCTGAGTTGTATGATTTTGACGATGAGAATGAAGAGAACAAATTTGATTTCAAAAAAATTGTGAGTGAAAATTGGGTCGAGCCACCAAGAAGAGAACGGAAGCGCAATTACTCAGAGTCTGAATACTTCAAGCAAACAATGCGCCAAGGTGGTCTTACTAAACCAAAAGAGCCTCGTATTCCTAGGATGCCTCAATTGCATGACTTCCAGTTTTTCAACACACACAGGCTGAGTGAGCTGTATGAAAAGGAAGTTCGATACCTCATGCAAACACATCAGAAGAATCAGGTGAAAGATTCCATAGATGTTGATGAACCAGAAGAGATGGGAGTTCCATTGACTGCCGAAGAGTTAGAAGAAAAGGAGCAGTTGCTAGAGGAGGGATTTTCATCATGGAGCCGGAAGGATTTTAATGCTTTCATTAGGGCCTGTGAAAAGTATGGCCGAAATGATATAAAAGGTATTGCTTCTGAGATGGAAGGAAAAACACAAGAGGAAGTTGAAAGATATGCAAAAGTCTTCAAAGAAAGATACAAGGAATTAAATGATTATGATAGAATTATTAAAAACATTGAAAGAGGGGAGGCAAGAATATCCCGGAAAGATGAGATCATGAAAGCTATTGGGAAGAAGTTGGACCGCTACAGGAATCCTTGGCTTGAATTGAAGATACAATATGGACAAAACAAAGGAAAGTTATACAATGAAGAATGTGACCGATTCATGATATGTATGATTCACAAACTTGGCTATGGTAATTGGGATGAGTTGAAGGCAGCTTTTCGAATGTCGCCCTTGTTTCGATTTGATTGGTTTGTCAAGTCTCGCACAACACAGGAAATTACAAGGAGGTGTGACACCCTCGTTCGGCTGGTAGAGAAGGAAAATCAAGAATATGATGAGAGGGAGAGGCAAGCTCGTAAAGAGAAGAAAATTGCTGCTAAGAGCATGACCCCATCGAAGCGTTCCATGCCTAGACAGAGTGAGAGTCCATCTCTGAAGAAGCGGAAGCAGTTAACCATGGATGACTATTTGAGCTCGGGGAAGAAGAAAAAATAA 3180 0.4211 MGRPSKTQVSNEFSSEEEKEEASAAAANHEIEDDDEELEAVARYVSSDDDDNSPDEAAEDDDEDKQDESNVDPEVSKREKARLREMQQLKKQKVQEILDAQNATIDADMNNRGKGRLNYLLQQTELFAHFAKGDQSSQKKAKGRGRHASKVTEEEEDEEYLKGEEDGLANTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERKHIREELLVAGKFDVCVTSFEMVIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDEHEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPFTTGDHLITNAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFCGYQYCRIDGNTGGDDRDASIEAFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTAELYDFDDENEENKFDFKKIVSENWVEPPRRERKRNYSESEYFKQTMRQGGLTKPKEPRIPRMPQLHDFQFFNTHRLSELYEKEVRYLMQTHQKNQVKDSIDVDEPEEMGVPLTAEELEEKEQLLEEGFSSWSRKDFNAFIRACEKYGRNDIKGIASEMEGKTQEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYRNPWLELKIQYGQNKGKLYNEECDRFMICMIHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQEITRRCDTLVRLVEKENQEYDERERQARKEKKIAAKSMTPSKRSMPRQSESPSLKKRKQLTMDDYLSSGKKKK* 1060
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0185 1059 SMART sant 937 998 IPR001005 -
Gso17g0185 1059 SMART sant 835 884 IPR001005 -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 51 69 - -
Gso17g0185 1059 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 747 837 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gso17g0185 1059 CDD SF2_C_SNF 485 610 - -
Gso17g0185 1059 Pfam SLIDE 892 1002 IPR015195 GO:0003677|GO:0005634|GO:0006338
Gso17g0185 1059 MobiDBLite consensus disorder prediction 1006 1059 - -
Gso17g0185 1059 Gene3D iswi atpase 890 922 - -
Gso17g0185 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 682 IPR027417 -
Gso17g0185 1059 Gene3D - 185 400 IPR038718 -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 135 156 - -
Gso17g0185 1059 PANTHER REMODELING FACTOR, PUTATIVE-RELATED 8 1059 - -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 1035 1059 - -
Gso17g0185 1059 Gene3D - 923 1026 - -
Gso17g0185 1059 SUPERFAMILY Homeodomain-like 838 888 IPR009057 -
Gso17g0185 1059 Coils Coil 83 103 - -
Gso17g0185 1059 CDD DEXHc_SMARCA1_SMARCA5 181 401 IPR044754 GO:0005524
Gso17g0185 1059 Gene3D ISWI, HAND domain 736 834 IPR036306 GO:0003677|GO:0006338|GO:0031491
Gso17g0185 1059 MobiDBLite consensus disorder prediction 132 162 - -
Gso17g0185 1059 Gene3D - 405 697 IPR027417 -
Gso17g0185 1059 PANTHER SNF2/RAD54 HELICASE FAMILY 8 1059 - -
Gso17g0185 1059 Pfam HAND 748 831 IPR015194 GO:0003677|GO:0006338|GO:0031491
Gso17g0185 1059 Pfam Helicase conserved C-terminal domain 487 599 IPR001650 -
Gso17g0185 1059 CDD SANT 838 882 IPR001005 -
Gso17g0185 1059 ProSiteProfiles SANT domain profile. 834 886 IPR017884 -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 1 80 - -
Gso17g0185 1059 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 489 640 IPR001650 -
Gso17g0185 1059 Gene3D - 835 889 - -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 12 29 - -
Gso17g0185 1059 Pfam SNF2-related domain 197 464 IPR000330 GO:0005524|GO:0140658
Gso17g0185 1059 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 399 IPR027417 -
Gso17g0185 1059 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 361 IPR014001 -
Gso17g0185 1059 SUPERFAMILY Homeodomain-like 890 1012 IPR009057 -
Gso17g0185 1059 Coils Coil 992 1019 - -
Gso17g0185 1059 SMART helicmild6 515 599 IPR001650 -
Gso17g0185 1059 MobiDBLite consensus disorder prediction 1006 1023 - -
Gso17g0185 1059 SMART ultradead3 180 372 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0185 Gso-Chr17 1707832 1717209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0185 205 626 RAD5 or RAD16-like Gene Family AT1G02670 27.921 1.95e-42 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Gso17g0185 SNF2_N 1.6e-72 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0185 K11654 - gmx:100814442 2028.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0185 17 1707832 1717209 Gso17g0185 17 1707832 1717209 ECH
Gso7g2122 7 45068691 45079775 Gso17g0185 17 1707832 1717209 GST
Gso17g0185 17 1707832 1717209 Gso15g0818 15 7522660 7530615 PCT
Gso17g0185 17 1707832 1717209 Gso11g2452 11 40522225 40530636 PCT
Gso15g0818 15 7522660 7530615 Gso17g0185 17 1707832 1717209 PCT
Gso11g2452 11 40522225 40530636 Gso17g0185 17 1707832 1717209 PCT