Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0183 ATGGAAGGCTCTGTCAACGAACGTCTTCATTTTGGGAAGATTGGATATGGGAGAAGATGCAGGATTCGTGCTCCCTGCTGCAACGAGATCTACTCATGCCGTCACTGTCATAACGAGGCCGCGAGCTTGTTGAAGAATCCCTTTGATCGCCACGAGCTCGTTCGCCAAGATGTTAAACAAGTTATTTGTTCAGTTTGTGACACTGAGCAACCTGTTGCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATCTGCAAATTCTTCGATGATGATGTTGAGAAAGAACAGTTTCACTGTGATGATTGTGGGATCTGCAGGGTTGGTGGTCGAGATAATTTTTTCCACTGCAAGAAGTGCGGGTCTTGTTATGCAGTTGGTCTGCATGATAATCATTTATGTGTGGAGAACTCCATGAGGCATCACTGTCCCATTTGTTACGAGTACCTTTTTGATTCATTGAAAGATGTCATTGTTATGAAATGTGGTCACACAATGCACCATGAATGTTACCTGGAGATGATAAAAAATGACAAATATTGTTGTCCCATATGCTCCAAGTCAGTGATTGACATGTCTAAGACATGGAAGAGAATTGATGAAGAGATTGAAGCAACCGTCATGCCTCAAGATTATCGAAACAGGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGTGGTCACTGCAGATCATATAATACCCGCACAGTTGCACCTCCAGTTCTTCCCCAATGA 789 0.4246 MEGSVNERLHFGKIGYGRRCRIRAPCCNEIYSCRHCHNEAASLLKNPFDRHELVRQDVKQVICSVCDTEQPVAQVCTNCGVKMGEYFCNICKFFDDDVEKEQFHCDDCGICRVGGRDNFFHCKKCGSCYAVGLHDNHLCVENSMRHHCPICYEYLFDSLKDVIVMKCGHTMHHECYLEMIKNDKYCCPICSKSVIDMSKTWKRIDEEIEATVMPQDYRNRKVWILCNDCNDTTEVYFHILGQKCGHCRSYNTRTVAPPVLPQ* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0183 262 SMART ring_2 148 190 IPR001841 -
Gso17g0183 262 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 1 262 - -
Gso17g0183 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 221 IPR013083 -
Gso17g0183 262 SUPERFAMILY CHY zinc finger-like 16 82 IPR037274 GO:0008270
Gso17g0183 262 SUPERFAMILY Zinc hairpin stack 84 141 IPR037275 -
Gso17g0183 262 Pfam Ring finger domain 147 190 IPR001841 -
Gso17g0183 262 Pfam CHY zinc finger 16 93 IPR008913 GO:0008270
Gso17g0183 262 ProSiteProfiles Zinc finger CTCHY-type profile. 83 147 IPR017921 -
Gso17g0183 262 PANTHER BNAC09G39170D PROTEIN 1 262 - -
Gso17g0183 262 Pfam Zinc-ribbon 195 253 IPR039512 -
Gso17g0183 262 ProSiteProfiles Zinc finger CHY-type profile. 6 81 IPR008913 GO:0008270
Gso17g0183 262 Gene3D - 222 257 - -
Gso17g0183 262 ProSiteProfiles Zinc finger RING-type profile. 148 191 IPR001841 -
Gso17g0183 262 SUPERFAMILY RING/U-box 147 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0183 Gso-Chr17 1696891 1700348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0183 16 261 C2H2 Transcription Factor Family AT3G18290 40.079 1.65e-52 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0183 K10144 - gmx:100812839 581.637
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0183 17 1696891 1700348 Gso17g0183 17 1696891 1700348 ECH
Gso7g2124 7 45086067 45089443 Gso17g0183 17 1696891 1700348 GST
Gso17g0183 17 1696891 1700348 Gso15g0821 15 7546751 7550505 PCT
Gso17g0183 17 1696891 1700348 Gso11g2450 11 40501907 40506025 PCT
Gso15g0821 15 7546751 7550505 Gso17g0183 17 1696891 1700348 PCT
Gso11g2450 11 40501907 40506025 Gso17g0183 17 1696891 1700348 PCT