Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0181 ATGCAAGGCCACGCTGAAACTAATAACTCTATCATGGCACCGCTCTCTCAAATCCCACCTTCTTCTTCTCTTCACCCTTCAAACATTGCTGAAACGGGTAACATCTACACCACCACCTCCAGAAAGCGTGTTAAGAAAATGGACCACACCAATTGCGAGAGCCTCAACGTGGAACGTGAAAGAAGGTCGAAGATGACTCAAATGTTCACTCAGCTTCAAACCACTGTCCCTGGTGTCTTACCTCAGGCTACAAGGGAAGTGATTATAAACGAGACAATTAAGTACATTAAGGAGCTTGAGATGAAGATGCAAAAGCTGGAGGAGTTGAAGGAGTCAATGAAAGAAGGGTCCATATTGCTTGCATGTGGTAACAACAACATGAATTGCTCCGTCACGGTTTCTGTCTCTGCTAATGTTGCATTCTTTGGTATTCAATCCCTGCCTCGATCCGGTTTGGTCTCGGTGATCATGAAGGTGTTCTGCAAGCACCGAGCTGAGATTTTGGCTGCAAATGTCTCAGTTAATAATGGGAAATTGATATTGGCAATCACGGCGATGGTGCAAAATGGTGGTGTCGTTGAAAATATTAGAAGACAAATTTTGAGTTTGTAG 612 0.4395 MQGHAETNNSIMAPLSQIPPSSSLHPSNIAETGNIYTTTSRKRVKKMDHTNCESLNVERERRSKMTQMFTQLQTTVPGVLPQATREVIINETIKYIKELEMKMQKLEELKESMKEGSILLACGNNNMNCSVTVSVSANVAFFGIQSLPRSGLVSVIMKVFCKHRAEILAANVSVNNGKLILAITAMVQNGGVVENIRRQILSL* 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0181 203 MobiDBLite consensus disorder prediction 1 30 - -
Gso17g0181 203 SMART finulus 55 105 IPR011598 GO:0046983
Gso17g0181 203 Gene3D - 36 128 IPR036638 GO:0046983
Gso17g0181 203 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 7 202 - -
Gso17g0181 203 Coils Coil 89 116 - -
Gso17g0181 203 Pfam Helix-loop-helix DNA-binding domain 57 100 IPR011598 GO:0046983
Gso17g0181 203 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 49 99 IPR011598 GO:0046983
Gso17g0181 203 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 7 202 - -
Gso17g0181 203 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 56 123 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0181 Gso-Chr17 1687672 1689132 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0181 20 107 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 35.789 2.90e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gso17g0181 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0181 - - gmx:102663211 372.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2126 7 45097528 45098693 Gso17g0181 17 1687672 1689132 GST