Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0177 ATGGGGTGTGTGTTTGGGAAAGAAGCATCAAAGAAGAAAGAGGAAGTGGAAGTTGCAAGAGCAGAAGATGGTGTGGCTCAGAACAGTGGGAATGTGAAGGTGGGTGGAGAAGAGGAGAAGAGCAAGCGCCCAAAAGGGGAGAGAAGGCGATCTTCGAAGCCGAATCCGAGGTTGAGCAATCCACCTAACCATGTACATGGTGAGCAAGTAGCTGCAGGGTGGCCCTCTTGGCTCTCCAAGGTTGCTGGGGAAGCTATTAATGGATTGGTCCCTAGAAGAGCTGACACTTTTGAGAAGCTTAATAAGGTTGGACAAGGTACATATAGCAATGTTTACAAAGCAAAGGATACTTTGACAGGGAAAATTGTTGCCCTAAAGAAGGTCCGCTTTGACAATTTAGAGCCTGAGAGTGTGAAATTCATGGCTAGAGAGATTCTTATTCTGCGCCATCTGGATCATCCCAATGTTGTCAAACTGGAAGGTTTGGTGACTTCAAGGATGTCATGCAGTTTGTACCTTGTCTTTGAATACATGGATCATGATTTGGCTGGACTTGCTACAAGCCCCACAATTAAGTTCACAGAGTCTCAGGTTAAATGTTACATGCATCAGCTACTTTCTGGATTGGAACACTGTCACAACCGTCATGTGCTGCATCGTGATATAAAGGGGTCAAATCTTCTCATTGACAGTGAAGGAATTCTTAGGATTGCTGATTTTGGATTAGCTTCCTTCTTCGATCCTAATCACAAGCACCCTATGACAAGCAGGGTGGTTACTTTATGGTATCGACCTCCAGAACTTCTCCTTGGAGCCACTGACTATGGTGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCTGAATTGTTGGCTGGGAAGCCTATTATGCCTGGTCGAACCGAGGTGGAGCAGCTACATAAGATATTTAAGCTTTGTGGTTCTCCTTCTGACGAGTATTGGAAAAAATTAAAGTTGCCACATGCTACCATTTTTAAGCCCCGAATATCATACAAGCGGTGCATAGCAGAGACATTTAAGAATTTCCCAGCATCATCCCTGCCACTAATTGAGATCCTTCTCGCAATCGATCCAGCTGAACGTCAAACTGCCACAGATGCTTTGCATAGTGAATTCTTTACATCAAAACCTTATGCCTGTGAACCCTCTAGCCTTCCAAAATATCCTCCCAGCAAGGAGATGGATACAAAGCTACGGGATGAAGAAGCTAGAAGATTGAGAGCTGCTGGCAAAGCTAATGCTGCTGGTGTCAAGAAATCACGTCCACGTGATCGAGGTGGAAGGGGAATTTCAGTTCCAGATTCCAATGCTGAGTTGCAAGCAAATATTGATAGATGGCGACTGGTAACGCATGCAAATGCTAAGAGCAAGAGTGAGAAGTTTCCTCCTCCTCACGAAGATGGAACTCTTGGCTATCCTTTGGGTTCTTCACATCACATGGATCCAATTTTCGATCCTCCTGATGTTCCATTTAGTTCCACAAACTTGTCATATCCTAAAGCAAATTTCCAGACCTGGTCTGGCCCATTGGTGGAACCTAGTGTGGATGCACCAAGGAGAAAGAAGAACATGGCAGGGAATGGGCACAGACAATCAAAGAAGGATTCTTATAGATAG 1641 0.4509 MGCVFGKEASKKKEEVEVARAEDGVAQNSGNVKVGGEEEKSKRPKGERRRSSKPNPRLSNPPNHVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLNKVGQGTYSNVYKAKDTLTGKIVALKKVRFDNLEPESVKFMAREILILRHLDHPNVVKLEGLVTSRMSCSLYLVFEYMDHDLAGLATSPTIKFTESQVKCYMHQLLSGLEHCHNRHVLHRDIKGSNLLIDSEGILRIADFGLASFFDPNHKHPMTSRVVTLWYRPPELLLGATDYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSDEYWKKLKLPHATIFKPRISYKRCIAETFKNFPASSLPLIEILLAIDPAERQTATDALHSEFFTSKPYACEPSSLPKYPPSKEMDTKLRDEEARRLRAAGKANAAGVKKSRPRDRGGRGISVPDSNAELQANIDRWRLVTHANAKSKSEKFPPPHEDGTLGYPLGSSHHMDPIFDPPDVPFSSTNLSYPKANFQTWSGPLVEPSVDAPRRKKNMAGNGHRQSKKDSYR* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0177 546 Pfam Protein kinase domain 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0177 546 MobiDBLite consensus disorder prediction 7 21 - -
Gso17g0177 546 MobiDBLite consensus disorder prediction 523 546 - -
Gso17g0177 546 SMART serkin_6 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0177 546 Gene3D Transferase(Phosphotransferase) domain 1 180 420 - -
Gso17g0177 546 SUPERFAMILY Protein kinase-like (PK-like) 92 386 IPR011009 -
Gso17g0177 546 MobiDBLite consensus disorder prediction 1 68 - -
Gso17g0177 546 MobiDBLite consensus disorder prediction 462 546 - -
Gso17g0177 546 MobiDBLite consensus disorder prediction 415 444 - -
Gso17g0177 546 MobiDBLite consensus disorder prediction 498 517 - -
Gso17g0177 546 PANTHER CYCLIN-DEPENDENT KINASE 32 531 - -
Gso17g0177 546 ProSitePatterns Serine/Threonine protein kinases active-site signature. 217 229 IPR008271 GO:0004672|GO:0006468
Gso17g0177 546 PANTHER CELL DIVISION PROTEIN KINASE 32 531 - -
Gso17g0177 546 Gene3D Phosphorylase Kinase; domain 1 85 179 - -
Gso17g0177 546 ProSiteProfiles Protein kinase domain profile. 97 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0177 546 ProSitePatterns Protein kinases ATP-binding region signature. 103 126 IPR017441 GO:0005524
Gso17g0177 546 CDD STKc_CDK9_like 97 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0177 Gso-Chr17 1657889 1662783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0177 92 419 Core Cell Cycle Gene Families AT5G10270 51.744 1.05e-116 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Gso17g0177 Pkinase 1.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0177 K08819 - gmx:100791757 1085.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0177 17 1657889 1662783 Gso17g0177 17 1657889 1662783 ECH
Gso7g2130 7 45123327 45128178 Gso17g0177 17 1657889 1662783 GST
Gso17g0177 17 1657889 1662783 Gso15g0827 15 7598075 7603059 PCT
Gso17g0177 17 1657889 1662783 Gso11g2445 11 40461966 40466856 PCT
Gso15g0827 15 7598075 7603059 Gso17g0177 17 1657889 1662783 PCT
Gso11g2445 11 40461966 40466856 Gso17g0177 17 1657889 1662783 PCT