Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0176 ATGATTGAAGTGCAAGCAAATGCCATGGAGCAGAGTTGGTGGGCCAATATGCCTCACGAGCTTCTCAGAGAGGTCCTCCTCCGAATTGAATCGTCGGAGTCCACGTGGCCGCTGCGGAGGAGCGTCGTGGCTTGTGGCGGAGTGTGCCGCACCTGGAGGAGGCTCATCGTCAAGGAGATTGTCAAGCCACCTCAATTCTCTTCCAACATAACCTTCCCCATCTCTCTCAAACAGCCTGGCCCGAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGCCTCACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCCCTAGTAGCTGATGATGGCAAGTTCCTTCTGGCTGCACGCAAGTTCAGACGCCCTACCTGCACAGATTATATTATCTCCCTTGATGCAGATGATATGTCCAGAGAAAGCAATGCCTATGTTGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTTACAATCTACGATAGAAAAAGTTGTTCCACTGAGCTGGTGGTGAATTCAAAACAAGTTTCACCTAGGCCCAGGGTCCCAACAGGCAACTATCCAGTTGCTCACATCTCATATGAACTGAATGTACTAGGCTCCAGGGGCCCAAGGAGAATGCACTGTGTCATGGATACCATTCCTGCTTCTGCTATTGAACCAGGAGGGGTAGCCGTAGCAGCCCCATCACAGACTGATTTTTCTGTTAGTAACAGAGATACTTCATTCCCATTTTTTCAGACAAACTCAACTAGTCTGGAAAACTCCATATCTGGAGACCAGAGCAATAAAAAAGATGATGTGCTAGTGTTGAGAAACAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTAACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGTTTCACCAGAAAATGGACATGCTGGACTGCAAGAGGATGAGGTCATCCTCCAATTTGGAAAAATTGGGAAGGATTTGTTTACAATGGATTACCGGTACCCTATCTCAGCATTTCAAGCATTTGCAATCTGCCTCAGCAGCTTCGCTACCACAGTTGCTTGCGAATGA 1089 0.4702 MIEVQANAMEQSWWANMPHELLREVLLRIESSESTWPLRRSVVACGGVCRTWRRLIVKEIVKPPQFSSNITFPISLKQPGPREHLLQCFIRRNSASQTYYLFLSLSSALVADDGKFLLAARKFRRPTCTDYIISLDADDMSRESNAYVGKLRSNFLGTKFTIYDRKSCSTELVVNSKQVSPRPRVPTGNYPVAHISYELNVLGSRGPRRMHCVMDTIPASAIEPGGVAVAAPSQTDFSVSNRDTSFPFFQTNSTSLENSISGDQSNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAVSPENGHAGLQEDEVILQFGKIGKDLFTMDYRYPISAFQAFAICLSSFATTVACE* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0176 362 SUPERFAMILY Tubby C-terminal domain-like 64 362 IPR025659 -
Gso17g0176 362 PANTHER TUBBY-RELATED 5 362 - -
Gso17g0176 362 SUPERFAMILY F-box domain 4 57 IPR036047 GO:0005515
Gso17g0176 362 PANTHER TUBBY-LIKE F-BOX PROTEIN 9 5 362 - -
Gso17g0176 362 Pfam F-box domain 14 56 IPR001810 GO:0005515
Gso17g0176 362 Gene3D Tubby Protein; Chain A 73 362 IPR025659 -
Gso17g0176 362 PRINTS Tubby superfamily signature 131 147 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 147 171 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 189 216 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 274 291 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 292 308 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 319 338 IPR000007 -
Gso17g0176 362 PRINTS Tubby superfamily signature 340 362 IPR000007 -
Gso17g0176 362 Pfam Tub family 76 357 IPR000007 -
Gso17g0176 362 ProSitePatterns Tub family signature 1. 292 305 IPR018066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0176 Gso-Chr17 1654755 1657145 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0176 4 362 TUB Transcription Factor Family AT2G47900 64.516 2.89e-170 479
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Gso17g0176 Tub 1.9e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0176 K19600 - gmx:100805161 733.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0176 17 1654755 1657145 Gso17g0176 17 1654755 1657145 ECH
Gso7g2131 7 45128971 45131545 Gso17g0176 17 1654755 1657145 GST
Gso17g0176 17 1654755 1657145 Gso15g0829 15 7618704 7623935 PCT
Gso17g0176 17 1654755 1657145 Gso11g2442 11 40443175 40448488 PCT
Gso15g0829 15 7618704 7623935 Gso17g0176 17 1654755 1657145 PCT
Gso11g2442 11 40443175 40448488 Gso17g0176 17 1654755 1657145 PCT