Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0172 ATGGACTGCAATAAAGAAGAGGCCTTAAGGGCCAAGGACATTGCTGAAAAGAAGATGGAAAACAGGGATTTTGTTGGGGCTCGCAAAATTGCTCTAAAGGCTCAGCAGCTGTACCCTGATCTGGAAAATATAGCTCAAATGCTTGTTGTTTGTGATGTGCACTGCTCTGCTGAGCAGAAATTGTATGGTAATGAGATGGATTGGTATGAAATTCTTCAGGTCGAACAGACAGCTGGTGATGCAATAATTAAGAAGCAATATAGGAAGTTTGCTCTCCAACTTCATCCTGACAAAAACAACTTTGCTGGTGCAGAAGCTGCATTTAAGTTGATTGGGGAAGCTCAAAGAGTGCTTTTGGACAGAGAAAAACGTTCTCTCTTTGACATGAAGCTTAGAGTTCCAATGAACAAACCTGCTATGTCACGTTTTGATTCTACAGTGAGGAACAATGTAAGATCCCACTCTACAAGCTCAAATGCTCGGCAGCAACAGCAGCAATCTAGGCAGCCAGCACAGCAGCAGCAGCAAAATGGTGACCGCCCTACTTTTTGGACGGTCTGCCCATTTTGTTCTGTTAGGTATCAATATTACAAAGAAATTTTAAATAAATCTCTTTGCTGTCAAAATTGCAAAAGGCCCTTTTTTGCATATGAAGTGAATGTACAAAGTACATCATCACCAGCATCTAATTCAACTCAGCAAGCTTCTGACCAGCAGAAAGATGGTTTGAATCATGGTACTTTCAAGATGGGTGCTGGATCTCATGGCAATTCACAGGCTGAGAAGTCCAATATGGGGCCTTATGATAAAAAAAGACCTAGTAATGTCTCTGGAAAACCATATGGAAAGAGGAAGAGGAAGCAGGTGGCTGAATCCAGTGAAGGTTCTGATTCTATGAGAACCAATGATTCTGAAGAAGATATAGTTGCCGGCAAGGATGGTAATTCTGGAGTAGAAAACCATTCAACTTCAAGAGAAGGGCTTCCACGCAGATCTACACGGCAAAAGCATCAAGTTTCCTACAAGGAGAATGTGAAAAACAGTGATAATGGCTTCTTGAAACCACGTGGTGATGGTGAAAGTCATGGTGAGACAACTAAAATAAATGATCAGAATGGTTTAGCTCCTGAACTTAAAGAAGTAAAACAGAAACAACACTTGTATTCTGAAAGAAATGAGGAAACTAAGACAGATAAGGGAAAAGATGCAGTGGGAGGGTCAACACAGATGGATGGAACTTCAGAGCATTCCCCAGATTCAACCTCCAAAGCAGAAAATCATCCAAATGTTTATGTCTATCCTGATGCAGAGTTCAGTGATTTTGACAAGGGCAAGAATAAAGAATGTTTTACTGCTGGGCAGATATGGGCTATTTATGATACATCAGAAGGCATGCCTAGATTCTACGCTTTAATCAGAAAAGTTCTGTCTCCTGGATTCAGGCTGCAGATAATATGGTTTGAACCACATCCAGATTGCAAGGATGAAATCAACTGGGTAAATGAGGAAATGCCTGTTGCTTGTGGGAAATATAAACTTAGTGACATTGACATCACTGAAGATCATCTAATGTTCTCTCATCCCGTTTTGTGTGAAAAAATTAGCCGTAATACTTTTAAAGTGTATCCTAGAAAAGGAGAAACTTGGGCCCTTTTTAAAAATTGGGATATTAAATGGTACATGGATGTGAAATCTCATCAGCTGTATGAATATGAGATTGTTGAAATCTTGACAGATTATGTTGAAGGTGAGGGTGTATATGTTGCATACATGGCTAAGTTGAAAGGTTTTGTAAGTCTCTTCCTTCGAAATATTAATGAAGAAAATAAATCATTTCAAATTCCACCACAGGAATTATTTAGATTCTCTCACAGGGTTCCGTCTTTCAAAATGACTGGTCAGGAAGGAGTGGGTGTACCAGCAGGATCTTATGAACTTGATCCTGGAGCTCTGTCAGTGAATCTTGAAGAGATTGCTGTTCCTGAAACTTCAGATGTGAAGGTTGGTCATAGTTCATCTGGCCTTGTGAATACAAGTCCTTCAGATAGATCAGAACTCCTTATGACATCTGAGGGAGATGCATCTATTCCCAAGGTTAATTTGGAAAGAAGCAATTTGGCAAGAGAGAACAAGGATTCTGTTGATGACAGTGATAATTGTTGTGCCCCTCCAGTATTAAGCTCAGAAACCATCGAAGTTCCAGATACTCAATTCTTCGATTTTGATGCTGGGAGGGCCCTTGAAAAGTTTCAGATTGGTCAGATTTGGGCATTTTACAGTGATGAGGATGGATTGCCAAAATATTATGGTCAGATTAAAAAGATTGCGACAAGCCCGGATCTTGAATTGCATGTTTACTGGCTTACTAGCTGCTGGCTACCAGAGAATACCATTAATTGGGATGACAAAGATATTCTTATTTCCTGTGGCAGATTTGAAGTTAATAAAACAGATGATCTTCTCAGTGTTTATAGTACTACCTCTTGTGTTTCACATCAAGTGCATGCTGATGCTGTTGGTAAGAATAAGAATTATGCCATCTTTCCGAGGAAAGGTGAAGTTTGGGCATTATATAGAAAATGGACAAATAAAATGAAATGTTTTGAGATGGAAAATTGCGAGTATGACATAGTTGAAGTTGTTGAAGAAACTGATCTGTCCATAAATGTTTTAGTTCTGGAGTTTGTTAGTGGGTATACTTCAGTTTTCAGGGGCAAATCAAATGAAGGATCATCAGTCAATCTACGAATACCCAGAGAAGAGTTGCTTAAGTTCTCCCACCAAATCCCAGCTTTCAAACTGACAGAAGAGCATGGCAATCTTAAGGGCTTCTGGGAACTTGATCCAGGTGCACTACCAATGCATTATTATGGCTTGAAATGA 2883 0.3968 MDCNKEEALRAKDIAEKKMENRDFVGARKIALKAQQLYPDLENIAQMLVVCDVHCSAEQKLYGNEMDWYEILQVEQTAGDAIIKKQYRKFALQLHPDKNNFAGAEAAFKLIGEAQRVLLDREKRSLFDMKLRVPMNKPAMSRFDSTVRNNVRSHSTSSNARQQQQQSRQPAQQQQQNGDRPTFWTVCPFCSVRYQYYKEILNKSLCCQNCKRPFFAYEVNVQSTSSPASNSTQQASDQQKDGLNHGTFKMGAGSHGNSQAEKSNMGPYDKKRPSNVSGKPYGKRKRKQVAESSEGSDSMRTNDSEEDIVAGKDGNSGVENHSTSREGLPRRSTRQKHQVSYKENVKNSDNGFLKPRGDGESHGETTKINDQNGLAPELKEVKQKQHLYSERNEETKTDKGKDAVGGSTQMDGTSEHSPDSTSKAENHPNVYVYPDAEFSDFDKGKNKECFTAGQIWAIYDTSEGMPRFYALIRKVLSPGFRLQIIWFEPHPDCKDEINWVNEEMPVACGKYKLSDIDITEDHLMFSHPVLCEKISRNTFKVYPRKGETWALFKNWDIKWYMDVKSHQLYEYEIVEILTDYVEGEGVYVAYMAKLKGFVSLFLRNINEENKSFQIPPQELFRFSHRVPSFKMTGQEGVGVPAGSYELDPGALSVNLEEIAVPETSDVKVGHSSSGLVNTSPSDRSELLMTSEGDASIPKVNLERSNLARENKDSVDDSDNCCAPPVLSSETIEVPDTQFFDFDAGRALEKFQIGQIWAFYSDEDGLPKYYGQIKKIATSPDLELHVYWLTSCWLPENTINWDDKDILISCGRFEVNKTDDLLSVYSTTSCVSHQVHADAVGKNKNYAIFPRKGEVWALYRKWTNKMKCFEMENCEYDIVEVVEETDLSINVLVLEFVSGYTSVFRGKSNEGSSVNLRIPREELLKFSHQIPAFKLTEEHGNLKGFWELDPGALPMHYYGLK* 961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0172 960 Pfam Domain of unknown function (DUF3444) 728 937 IPR024593 -
Gso17g0172 960 Pfam Domain of unknown function (DUF3444) 429 635 IPR024593 -
Gso17g0172 960 PRINTS DnaJ domain signature 69 87 IPR001623 -
Gso17g0172 960 PRINTS DnaJ domain signature 87 102 IPR001623 -
Gso17g0172 960 PRINTS DnaJ domain signature 103 123 IPR001623 -
Gso17g0172 960 ProSiteProfiles dnaJ domain profile. 67 131 IPR001623 -
Gso17g0172 960 Pfam DnaJ domain 67 128 IPR001623 -
Gso17g0172 960 CDD DnaJ 67 120 IPR001623 -
Gso17g0172 960 MobiDBLite consensus disorder prediction 224 428 - -
Gso17g0172 960 PANTHER - 1 958 - -
Gso17g0172 960 Gene3D DnaJ domain 64 183 IPR036869 -
Gso17g0172 960 SMART dnaj_3 66 123 IPR001623 -
Gso17g0172 960 MobiDBLite consensus disorder prediction 324 343 - -
Gso17g0172 960 MobiDBLite consensus disorder prediction 149 179 - -
Gso17g0172 960 MobiDBLite consensus disorder prediction 377 401 - -
Gso17g0172 960 SUPERFAMILY Chaperone J-domain 62 133 IPR036869 -
Gso17g0172 960 MobiDBLite consensus disorder prediction 224 243 - -
Gso17g0172 960 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 958 - -
Gso17g0172 960 MobiDBLite consensus disorder prediction 407 427 - -
Gso17g0172 960 MobiDBLite consensus disorder prediction 284 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0172 Gso-Chr17 1598867 1602916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0172 4 219 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 34.389 3.80e-30 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0172 - - gmx:100789112 1952.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0172 17 1598867 1602916 Gso17g0172 17 1598867 1602916 ECH
Gso7g2136 7 45185465 45189758 Gso17g0172 17 1598867 1602916 GST
Gso17g0172 17 1598867 1602916 Gso15g0836 15 7674364 7679627 PCT
Gso17g0172 17 1598867 1602916 Gso11g2436 11 40369632 40374780 PCT
Gso15g0836 15 7674364 7679627 Gso17g0172 17 1598867 1602916 PCT
Gso11g2436 11 40369632 40374780 Gso17g0172 17 1598867 1602916 PCT