Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0170 ATGGGAAGGTATCGAAGCCGGAGCAGGAGCTATAGCCCCCGGCGGCGAAGCAGGAGCCCACCGGCACCGCGCGGACGGAACCGCTATGTCGACGATCGCTACGGTGACAGCAGGTCTTACAGAGACCGCCGCTCACCTCTTCCTTCCGGCTTGCTTGTTCGCAATCTTCCCCTTGATGCCAGGCCTGAGGATCTTAGGATCCCATTTGAGCGCTATGGTCCTGTGAAGGATGTTTATCTACCTAAAAATTACTACACTGGTGAGCCTCGCGGCTTTGGATTTGTGAAATATCGATATGGTGAAGATGCAGCTGAGGCAAAGCAACATCTTAATCATACTATCATTGGTGGACGTGAAATAAGGATTGTTTTCGCTGAGGAAAACAGGAAAACTCCTCAAGAAATGCGTGTTAACACTCGAGGAAGTGGTCGATATGGAGGTGGTAGAAGGAGGAATCATACTAGATCCCCACGACGCCGATATCGTTCATATTCTCGGTCTCCATCACCAGCTAGGGATGATTCAAGGGACGGCAGGGGTAGGGATGATTATTATTCTCCTGAGCGATCAAGATCTTATTCTAGGTCTCTCTCTCCCAGTGGTGGGAAGGACTACAGGAAGTCCCCTCGTCTTAGGGAGAATGGTCGGAGTCCTAATGACAAGAAGGATCAGACACCCAGCAGATCCGAGAGTCCTAGGGGCAATGATCGTAGTCCTTCAAGGTCTCGTTCACGGTCATACAGTCCACGCTGA 753 0.5113 MGRYRSRSRSYSPRRRSRSPPAPRGRNRYVDDRYGDSRSYRDRRSPLPSGLLVRNLPLDARPEDLRIPFERYGPVKDVYLPKNYYTGEPRGFGFVKYRYGEDAAEAKQHLNHTIIGGREIRIVFAEENRKTPQEMRVNTRGSGRYGGGRRRNHTRSPRRRYRSYSRSPSPARDDSRDGRGRDDYYSPERSRSYSRSLSPSGGKDYRKSPRLRENGRSPNDKKDQTPSRSESPRGNDRSPSRSRSRSYSPR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0170 250 Gene3D - 26 165 IPR012677 -
Gso17g0170 250 PANTHER SERINE/ARGININE-RICH SC35-LIKE SPLICING FACTOR SCL28 1 250 - -
Gso17g0170 250 MobiDBLite consensus disorder prediction 1 47 - -
Gso17g0170 250 SMART rrm1_1 50 123 IPR000504 GO:0003723
Gso17g0170 250 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
Gso17g0170 250 MobiDBLite consensus disorder prediction 205 240 - -
Gso17g0170 250 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 250 - -
Gso17g0170 250 MobiDBLite consensus disorder prediction 166 189 - -
Gso17g0170 250 MobiDBLite consensus disorder prediction 25 43 - -
Gso17g0170 250 MobiDBLite consensus disorder prediction 126 250 - -
Gso17g0170 250 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 121 IPR000504 GO:0003723
Gso17g0170 250 MobiDBLite consensus disorder prediction 146 162 - -
Gso17g0170 250 MobiDBLite consensus disorder prediction 1 22 - -
Gso17g0170 250 SUPERFAMILY RNA-binding domain, RBD 51 155 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0170 Gso-Chr17 1577915 1583016 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0170 53 111 Eukaryotic Initiation Factors Gene Family AT3G11400 44.068 2.09e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0170 K12900 - gmx:100788749 310.842