Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0141 ATGGCACAACAAGTTCAAGTTCAAGTATTCAGTACATGTTATTATTGTCCACCACCTCAATATGTATCCCTTCGCCGAATCGGAATTTTGAACCAATTAAAGTGTGCTACTATTCCTTCACTCTCAGTTTCCGCCTCTTCTGTTCTTCGCAACGCGTCGTTTTGCTGCACCTCTTCTGTCCCATGCAATTTGCCTTCTTCACCCAAAATCTTCGTCAAAGGGCTTCCTCTCTCAACCTCCGAAGGACATTTGATGAAGGTGTTTTCAGAGTTTGGTGAAGTTACTCTAATCCAGCTTCCAATAGATAAAGAATCAGGGCAGTCTTTAGGATTTGCATACATTTGGTTTGTCAAGGAAGAGTCTGCACAATTGGCTGTCCTAGAGATGAATGGAAAGGTTTATTTATGTTACCATTGCAAAGCCTGGATCATCAAAAAGTTCCAAGAGGGCAACGGCCTACAAATTTTAATCATATGA 477 0.413 MAQQVQVQVFSTCYYCPPPQYVSLRRIGILNQLKCATIPSLSVSASSVLRNASFCCTSSVPCNLPSSPKIFVKGLPLSTSEGHLMKVFSEFGEVTLIQLPIDKESGQSLGFAYIWFVKEESAQLAVLEMNGKVYLCYHCKAWIIKKFQEGNGLQILII* 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0141 158 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 4, MITOCHONDRIAL ISOFORM X1 49 134 - -
Gso17g0141 158 Gene3D - 56 142 IPR012677 -
Gso17g0141 158 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 49 134 - -
Gso17g0141 158 SMART rrm1_1 69 140 IPR000504 GO:0003723
Gso17g0141 158 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 134 IPR000504 GO:0003723
Gso17g0141 158 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 158 IPR000504 GO:0003723
Gso17g0141 158 SUPERFAMILY RNA-binding domain, RBD 62 135 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0141 Gso-Chr17 1313347 1316235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0141 70 134 Eukaryotic Initiation Factors Gene Family AT3G11400 40.000 9.42e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0141 - - gmx:100791917 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0141 17 1313347 1316235 Gso17g0141 17 1313347 1316235 ECH
Gso7g2170 7 45455632 45458603 Gso17g0141 17 1313347 1316235 GST