Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0140 ATGAACATGGTTTCGGTGTCAGCAGCGGTGTGCAAGCCCGTAGTAGCGAGTTTCAACCCGGCATCACTGAGGAATATGGACTCGCTGTCCCTTTTTCGTCACCACCGCAACAACAAGGAGAAAGTAGTGGTAATCATGGGCGCAACGGGGACAGGAAAGTCAAAACTGGCAATAGACCTCGCCACGCAATTCCCACCAGCGGAGATAGTCAACTCCGACAAAATGCAAGTGTACGAAGGCCTAGACATCACCACGAACAAAGTCACCGAGGAAGAGCGTCGCGGGGTCCTACACCATCTCCTAGGCACGGTCAACCCCAACACCAACTTCACCGCCCAAGACTTTTGCGACCACGCCACACTCGCCGTTGGCTCCATTTTGGGCCGTGACGGTTTACCCATCATTGCGGGTGGGTCCAATTCCTTCCTCGACGCGTTGGTCAACCATCACACCGAGTTTCGGTTACGCTACGAGTGCTGCTTCCTCTGGGTCGATGTTTCACTCCCCGTCCTTCATTCCTCTCTCTCCGCACGTGTGGATCGCATGATCCACGCTGGCCAGGTCCACGAGGTTCGAAAAAGCTTTCAGTACCATAACGACGATTATACCGTAGGTTTACGAAAGGCCATTGGCGTCCCTGAGTTTCATGATTTTTTCAGAGCCGAAGCCGACGGAGCCGATGAGAGGACCAAACAGCGGCTCCTCGAGGCTGCCATTGCTTCCCTCAAAACCAACAACTGCAGCCTCGCCAACCGACAGGTCCAGAAGATTCATCGTCTTTACGGCATGTGGAAAAGGAACATGCACCGCCTCGACGCCACCGAGGTTTTTCTCAAGAACGCTACTCGCCAGGAGGAGGCAGAGGAGGCGTGGGAGGATCACGTGTTGTCCAAGAGCAGAAGGATTCTCAATAAGTTTCTGTATGAGGATACGCATGTCGCTCCCGCAGGTATTGCTGCGTCAGTTGTTATTGCTTCTTCGCCGCCAGCCATGGCTGCCGCCGCCGCCGCCGCAACTCACTAG 1023 0.5484 MNMVSVSAAVCKPVVASFNPASLRNMDSLSLFRHHRNNKEKVVVIMGATGTGKSKLAIDLATQFPPAEIVNSDKMQVYEGLDITTNKVTEEERRGVLHHLLGTVNPNTNFTAQDFCDHATLAVGSILGRDGLPIIAGGSNSFLDALVNHHTEFRLRYECCFLWVDVSLPVLHSSLSARVDRMIHAGQVHEVRKSFQYHNDDYTVGLRKAIGVPEFHDFFRAEADGADERTKQRLLEAAIASLKTNNCSLANRQVQKIHRLYGMWKRNMHRLDATEVFLKNATRQEEAEEAWEDHVLSKSRRILNKFLYEDTHVAPAGIAASVVIASSPPAMAAAAAAATH* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0140 340 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 31 313 - -
Gso17g0140 340 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 38 200 IPR027417 -
Gso17g0140 340 Pfam IPP transferase 76 150 - -
Gso17g0140 340 Pfam IPP transferase 154 255 - -
Gso17g0140 340 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 31 313 IPR039657 -
Gso17g0140 340 CDD NK 42 93 - -
Gso17g0140 340 Gene3D - 39 307 IPR027417 -
Gso17g0140 340 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 168 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0140 Gso-Chr17 1303137 1305119 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0140 156 311 C2H2 Transcription Factor Family AT2G27760 30.220 2.16e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0140 K10760 - gmx:100778430 630.943
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0140 17 1303137 1305119 Gso17g0140 17 1303137 1305119 ECH
Gso7g2171 7 45471455 45473481 Gso17g0140 17 1303137 1305119 GST
Gso17g0140 17 1303137 1305119 Gso15g0874 15 8083251 8085423 PCT
Gso17g0140 17 1303137 1305119 Gso11g2389 11 39901250 39903214 PCT
Gso15g0874 15 8083251 8085423 Gso17g0140 17 1303137 1305119 PCT
Gso11g2389 11 39901250 39903214 Gso17g0140 17 1303137 1305119 PCT