Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0113 ATGGATATGTTTAAGCAGAATCAGAAGAAGAAAAACACTGGCCGGAAAAAGATTGAGATCAAGAAGCTTGAAAAGGCTAGCAACAAGCAAGTGACGTTCTCAAAAAGAAGAACAGGACTATTCAAAAAAGCCAGTGAACTCTGCATTTTATGCAATGCTTATGTAGCCATAATTGTGTTTTCTCCTGCTGACAAATTGTTCTGCTTTGGCCATCCAGACATCGACTCCATAATTGGTCGCTATCTCAAAGGAGACAACAACGCAGAGTTTGAACCAGCAGCAAAGTCATCAAAAGAAAAATCAGTGTCATATGAGGAGTGTAACAGACAGTACGAAGCGGCCACAAAGAAGTTGGAGTTGGAAAAGAAGAACTTGGCACAAACTGAGATTTTGGCTAAGGGTTGGAACAGAAGGTGGTGGAAAGATCCCATTGATCAGATGAGTGAGCAACAGTTGGAGCAGTTTATGATGTCCATTTACGAGTTAAGGAAAAAACTGACAGAAAGAACAGGTGAATTGATGATGCTTGGGACCATGACGTAG 543 0.4107 MDMFKQNQKKKNTGRKKIEIKKLEKASNKQVTFSKRRTGLFKKASELCILCNAYVAIIVFSPADKLFCFGHPDIDSIIGRYLKGDNNAEFEPAAKSSKEKSVSYEECNRQYEAATKKLELEKKNLAQTEILAKGWNRRWWKDPIDQMSEQQLEQFMMSIYELRKKLTERTGELMMLGTMT* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0113 180 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 10 176 - -
Gso17g0113 180 SUPERFAMILY SRF-like 14 83 IPR036879 GO:0003677|GO:0046983
Gso17g0113 180 SMART madsneu2 13 72 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 PRINTS MADS domain signature 15 35 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 PRINTS MADS domain signature 35 50 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 PRINTS MADS domain signature 50 71 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 PANTHER MADS BOX PROTEIN 10 176 - -
Gso17g0113 180 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 23 69 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 Coils Coil 104 131 - -
Gso17g0113 180 ProSiteProfiles MADS-box domain profile. 13 73 IPR002100 GO:0003677|GO:0046983
Gso17g0113 180 Gene3D - 26 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0113 Gso-Chr17 1074387 1074929 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0113 10 167 Type I MADS-box Gene Family AT5G60440 41.667 2.60e-37 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Gso17g0113 SRF-TF 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0113 - - gmx:100814979 340.117