Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0108 ATGGGTTGTCAAGGTAGCAAGGAGAAAAAATCAAAGACAGAATTTACTACTTCCTATGGATCAGCAGCCACTGGTAGTGGTGGTGGTACTAGTTACAACACTGTTCAGCCTCCGCCGCCGCCACCACCACCTACTACTACTGCTACTACTACTAATCAGGTTCAAACATCAGCAGCACCCAAACCACAATCAAAAGCTTCTCCTACAGTGCAGCAGAAAGCAGACACGAGGATTCTGGGGAAACCCTTTGACGACATAAAAAAATACTACAGTTTAGGGAAGGAATTGGGAAGGGGGCAATTCGGGATAACGTATCTGTGCACGGATAATGCGAGCGGTGGGACGTACGCGTGCAAGTCGATACTGAAGAGGAAGCTGGTGTCGAAGGCGGACAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCGGGGCAACCCAACATTGTCGAGTTTAAGGGCGCCTACGAGGACAGGTTTTCCGTCCACCTTGTCATGGAACTCTGCGCCGGCGGGGAGCTCTTCGATCGTATCATCGCCCAGGGTCATTACTCCGAGAGAGCCGCTTCCTCTCTCTGCCGCTCCATTGTCAATGTTGTCCACATTTGCCACTTCATGGGTGTCATGCACCGCGATCTCAAGCCTGAAAATTTCTTGCTCTCTAGCAAGGACGACCACGCCACTCTCAAGGCCACTGATTTTGGTCTCTCTGTCTTCATTGAACAAGGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAGGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAAGGTGAAATTGATTTTGTAAGTGAACCATGGCCATCCATATCAGACAGTGCTAAAGACCTAGTCAGGAAGATGCTGACACAGGATCCAAACAAGCGGATTACTTCTTCTCAAGTCCTTGAACACCCATGGATGAGAGAAGGTGGAGATGCATCTGATAAACCAATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTCAAGAAGCTAGCATTGAAGGTTATCGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTCAAAGCAATGTTTGCCAACATGGACACTGACAATAGTGGCACTATCACCTATGAAGAATTAAAGACTGGCTTGGCTCGAATCGGATCAAAACTGTCTGAGGCTGAAGTGAAGCAACTCATGGATGCGGCTGATGTTGACGGAAATGGGTCGATTGACTATCTTGAATTCATTTCGGCTACAATGCATAGGCACAGACTTGAACGTGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTATATTACAAGAGATGAATTGGAGATTGCTATGACTCAAAATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATGCAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGTGGAATGCCACACCAGGGACAGCTTCTTTAA 1617 0.4521 MGCQGSKEKKSKTEFTTSYGSAATGSGGGTSYNTVQPPPPPPPPTTTATTTNQVQTSAAPKPQSKASPTVQQKADTRILGKPFDDIKKYYSLGKELGRGQFGITYLCTDNASGGTYACKSILKRKLVSKADREDMKREIQIMQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAASSLCRSIVNVVHICHFMGVMHRDLKPENFLLSSKDDHATLKATDFGLSVFIEQGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLTQDPNKRITSSQVLEHPWMREGGDASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNSGTITYEELKTGLARIGSKLSEAEVKQLMDAADVDGNGSIDYLEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELEIAMTQNGMGDEATIKEIISEVDADNDGRINYEEFCAMMRSGMPHQGQLL* 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0108 538 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Gso17g0108 538 ProSitePatterns EF-hand calcium-binding domain. 476 488 IPR018247 -
Gso17g0108 538 Gene3D Phosphorylase Kinase; domain 1 92 175 - -
Gso17g0108 538 CDD STKc_CAMK 90 347 - -
Gso17g0108 538 SUPERFAMILY EF-hand 387 527 IPR011992 -
Gso17g0108 538 ProSiteProfiles EF-hand calcium-binding domain profile. 391 426 IPR002048 GO:0005509
Gso17g0108 538 Gene3D Transferase(Phosphotransferase) domain 1 176 355 - -
Gso17g0108 538 ProSiteProfiles Protein kinase domain profile. 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0108 538 MobiDBLite consensus disorder prediction 15 33 - -
Gso17g0108 538 ProSiteProfiles EF-hand calcium-binding domain profile. 463 498 IPR002048 GO:0005509
Gso17g0108 538 ProSitePatterns EF-hand calcium-binding domain. 511 523 IPR018247 -
Gso17g0108 538 Pfam Protein kinase domain 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0108 538 SMART serkin_6 90 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0108 538 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 52 532 - -
Gso17g0108 538 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Gso17g0108 538 PANTHER SERINE/THREONINE-PROTEIN KINASE 52 532 - -
Gso17g0108 538 MobiDBLite consensus disorder prediction 1 76 - -
Gso17g0108 538 ProSiteProfiles EF-hand calcium-binding domain profile. 427 462 IPR002048 GO:0005509
Gso17g0108 538 Pfam EF-hand domain pair 466 528 IPR002048 GO:0005509
Gso17g0108 538 Pfam EF-hand domain pair 396 456 IPR002048 GO:0005509
Gso17g0108 538 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Gso17g0108 538 MobiDBLite consensus disorder prediction 48 74 - -
Gso17g0108 538 SMART efh_1 431 459 IPR002048 GO:0005509
Gso17g0108 538 SMART efh_1 467 495 IPR002048 GO:0005509
Gso17g0108 538 SMART efh_1 502 530 IPR002048 GO:0005509
Gso17g0108 538 SMART efh_1 395 423 IPR002048 GO:0005509
Gso17g0108 538 ProSiteProfiles EF-hand calcium-binding domain profile. 499 533 IPR002048 GO:0005509
Gso17g0108 538 ProSitePatterns EF-hand calcium-binding domain. 440 452 IPR018247 -
Gso17g0108 538 Gene3D - 356 530 - -
Gso17g0108 538 SUPERFAMILY Protein kinase-like (PK-like) 88 356 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0108 Gso-Chr17 1038126 1042427 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0108 1 538 EF-hand Containing Proteins AT4G04720 73.492 0.0 821
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Gso17g0108 Pkinase 4.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0108 K13412 - gmx:100812843 1020.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2206 7 45750209 45754697 Gso17g0108 17 1038126 1042427 GST