LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gso17g0090	ATGTTCCCTGCCTTAGGATTTCCGGTCAACCTTAGCCCCTCCGATCCCAACCATCGGACGGTCCTTGCTGAAGTTGACTTCCTCTCCGCTAGAAACAATTCATCACCTCACACTAACGATCATGGAACCCCTCCTAAGTCTTATCCCCATGTAAATACCGGTTTACAACTTCTCACCGCAAACGCTGGGAGTGACCAGTCGACGGTGGATGATGGGGCCTCGTCGGAGGCTGAAGATAAGCGTGCCAAGATGACTGAGCTGGCACGACTGAAAGAGGACCTTCGAAACATGAATGCAGAGAACCAAAAGCTGAAGGAGATGCTCAGCCATGTCAGCAGTAACTACGCGAACTTGCAAATGCATCTTGCAGCAGTACTGCAACAGCAACAGAACCAACGCACTGAGAGCACGGAACAAGAGGTTGTTCAAGGAAAATTAGCTGAGGAGAGAAAGCATGGAGTTGGCGGAGGAACGGTGCCTAGACAATTCCTGAGTTTAGTTCCAAGTGAAATAGATGATCAAGTATCTAATTCTTCTTCCGGTGAAAGGACTCGATCAACCACACCTCCCAGCAATAAAAATGATAAGGATAACAAAGAGACTGATGACAAGTTGAACCCTTCCAACCCTACGACGGATCCATCCACTAGTCCAGAAGCCGCTATGAGAAAAGCTCGTGTCTCAGTCCGTGCCCGATCAGAAGCACCCATGATCAGTGATGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGCTGCCCAGTTCGCAAACAAGTTCAACGTTGTGCGGAGGACAGAACAATTTTGACAACAACGTACGAAGGGACCCATAACCATCCACTGCCACCAGCTGCTATGGCCATGGCATCGACCACTGTAGCTGCTACTAGCATGTTGTTGTCTGGGTCAATGTCCAGTGCTGATGGAAAAATGAACCCCAATTTGCTAACTGGAGCTATTCTTCCATGCTCTAACATGGCAACACTTTCAGCTTCAGCACCATTCCCCACAGTGACATTGGACCTCACACACAACCCAAATGCGTTGCAGCAGTACCAATTAAGACCTCAAACTCAAACCCCATTCCTCCCGTCACCGCCTCAGAACTTTATGTCTGGACCCACAACACCACAACTGCCGAAACTGATTGCACAAGTGCTCTATAATCAATCCAAATTCTCAGGCCTTCAACTTTCTCAGGATGTGGGGCCTAATAATTCCCAAGCTCCAACACCGTCCTTGTTGCAGCCAAGCCAACAGGTCTCACTCACTGACACCGTCAGTGCCATCACCGCGGATCCAAACTTCCCCGCAGCGCTCACGGCCGCCATCTCCTCCATTATCGGTGGTGCTAATCCAAACAACAACAACAACAGTAGCAATCCCAATGTCATAAATAGTGCTACAATTAATCAATAG	1470	0.4884	MFPALGFPVNLSPSDPNHRTVLAEVDFLSARNNSSPHTNDHGTPPKSYPHVNTGLQLLTANAGSDQSTVDDGASSEAEDKRAKMTELARLKEDLRNMNAENQKLKEMLSHVSSNYANLQMHLAAVLQQQQNQRTESTEQEVVQGKLAEERKHGVGGGTVPRQFLSLVPSEIDDQVSNSSSGERTRSTTPPSNKNDKDNKETDDKLNPSNPTTDPSTSPEAAMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDRTILTTTYEGTHNHPLPPAAMAMASTTVAATSMLLSGSMSSADGKMNPNLLTGAILPCSNMATLSASAPFPTVTLDLTHNPNALQQYQLRPQTQTPFLPSPPQNFMSGPTTPQLPKLIAQVLYNQSKFSGLQLSQDVGPNNSQAPTPSLLQPSQQVSLTDTVSAITADPNFPAALTAAISSIIGGANPNNNNNSSNPNVINSATINQ*	490

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	31	71	-	-
	Gso17g0090	489	ProSiteProfiles	WRKY domain profile.	233	299	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	169	188	-	-
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	415	434	-	-
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	470	489	-	-
	Gso17g0090	489	Pfam	WRKY DNA -binding domain	240	297	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	147	235	-	-
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	31	82	-	-
	Gso17g0090	489	MobiDBLite	consensus disorder prediction	189	206	-	-
	Gso17g0090	489	SUPERFAMILY	WRKY DNA-binding domain	231	299	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0090	489	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	15	477	IPR044810	GO:0003700
	Gso17g0090	489	Gene3D	WRKY domain	223	300	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Gso17g0090	489	Coils	Coil	77	114	-	-
	Gso17g0090	489	PANTHER	WRKY TRANSCRIPTION FACTOR 6	15	477	-	-
	Gso17g0090	489	SMART	WRKY_cls	238	298	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gso17g0090	Gso-Chr17	894160	897005	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gso17g0090	17	469	WRKY Transcription Factor Family	AT1G62300	53.333	3.47e-138	407

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Gso17g0090		WRKY	4.4e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gso17g0090	-		-	gmx:100784668	926.391