Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0088 ATGGCCACGTCAACCTCACTCCTCTTGCTTTCATGCTTCATGCTACACCTTGCTTCAACCTTCGTTATTGTCCATTCAACAGATAACAAGTACTACAACACTTTACCTACCTCAAAGTATATGATCCCGGAGAGTCCTAAGAAAGCATTGCTCAATGTGATAGACTCTTGTTGGCGTACAAAGCCAAATTGGGCTTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGTGGCAAGTATGGTGCAATATACCGAGTCAAAGATCCCTCTGATGACCCTGTAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACAGAGCCCCTCTGGATCATTTTTGACAAAGACATGGTTATTAGGCTAAAAAATGAGCTTATCATGAATAGCTACAAGACCATTGATGGAAGAGGGGCTAAAGTGGAAATTACTGATGGGCCTTGCATTACAATACAAGGTGTTAGTCATGTCATTATACATGGCATTAACATCCATGATTGTAAACCAGCCAAACCTGGCCTTGTGAGGAGTACTCCTGACCATGTTGGTCATCGTCTAGGCTCTGATGGAGATGCCATTAGCATATTTGATTCCTCCAATATTTGGATTGATCATTGCTTTTTGGCTCGTTCCACTGATGGCCTAATCGATGTTATTCATGCATCAACCGCCATTGCGATCTCTAACAATTACTTTACCCAGCATGACAAAGTTATGTTGCTAGGACATAATGACCAATACACAGCGGATAAAATAATGAGAGTAACAATAGCATTCAACCGTTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAGATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGCAATCTTTATGTAGCACCAAATGACCCAAATGCAAAACAGGTTACCAAGAGGGAAGGGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGATTTATTCCTAAATGGTGCTTATTTTGTACCATCTGGGTTTGGAAGCTGTGCCCCAAATTATTCACCTACTCAATCTTTTTCTGCTGCTCCAGCGTACTTGGTGCCTGCAATGACTCTCAATGCTGGCCCCACAAATTGTGTTGTTGGGAGAGCATGTTAG 1197 0.4294 MATSTSLLLLSCFMLHLASTFVIVHSTDNKYYNTLPTSKYMIPESPKKALLNVIDSCWRTKPNWASNRQALADCAIGFGKDATGGKYGAIYRVKDPSDDPVNPKPGTLRYGAIQTEPLWIIFDKDMVIRLKNELIMNSYKTIDGRGAKVEITDGPCITIQGVSHVIIHGINIHDCKPAKPGLVRSTPDHVGHRLGSDGDAISIFDSSNIWIDHCFLARSTDGLIDVIHASTAIAISNNYFTQHDKVMLLGHNDQYTADKIMRVTIAFNRFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNLYVAPNDPNAKQVTKREGKENWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSPTQSFSAAPAYLVPAMTLNAGPTNCVVGRAC* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0088 398 SUPERFAMILY Pectin lyase-like 52 389 IPR011050 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 74 91 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 97 122 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 133 149 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 197 218 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 277 296 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 339 363 IPR018082 -
Gso17g0088 398 PRINTS Pollen allergen Amb family signature 369 392 IPR018082 -
Gso17g0088 398 Gene3D - 51 391 IPR012334 -
Gso17g0088 398 Pfam Pectate lyase 132 316 IPR002022 -
Gso17g0088 398 PANTHER PECTATE LYASE 18-RELATED 1 397 IPR045032 GO:0030570
Gso17g0088 398 SMART amb_all 125 322 IPR002022 -
Gso17g0088 398 PANTHER PECTATE LYASE 1 397 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0088 Gso-Chr17 886879 889044 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0088 37 398 Polysaccharide Lyase AT1G11920 69.697 0.0 531
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0088 K01728 - gmx:100807483 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0088 17 886879 889044 Gso15g0927 15 8644708 8646363 PCT
Gso17g0088 17 886879 889044 Gso9g0045 9 437256 439123 PCT