Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0086 ATGATAGAGTTCTCAAGATACTCAAAACATTCCGGAACTGTCCAGAGGAAAGCTGACAAAATCCCTGAGTATGGTCACAAGAAACAAGAACTAAAAGGGGAAGAAACTATGAGATGTTTAAAGAAAATTAATGCAGTAAGATTGGAAGCTAGGGTTACACAAGGAGAACAAATAAATCAGCTTGCTAAGGACAAGATCTTAAAATGCTCGAAAGATTTTGGAACTACAAAGACGAAAAAGGTTGAAGAAATTTATAAGTGTGATAATACAAAATCGAAGTCATGCAAGAAAGGACATGAGACACAGAAGCTTACTGTCTCAAACAAGAAAAGGAAATTTGAAGATGATCTCTTGAATGACGATTTTGAAGATGAAGAAATGCTCATTCTTTTAAAGTCAAGGACCAGGAGAAGAAGAATGAATAATGTTATGGATGTTGGACAAAATCCCCGAAAATGTCATCAATGCATGAAAAAGGAGAGAACATTTTTTGTGCCTTGTACTAAATGCCCAAAAATGTACTGTATGCGATGTGTCAATAAATATTACCCTGATATGTCAGTAGAAGAAATTGCTTCAAGTTGTCCATTTTGCCGGAAAAATTGCAATTGCAATGCTTGCTTGTGTTCAAAAGGAATGATTAAGACAGCTAACAGGGATATCAGCGATTATGAAAAAGCTCAGTATCTGCAATATATGATTAAATTACTCCTACCGTTTTTTGAACAAATTTGTCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAATTACTAGGAAAATCTTCTTTTGAGATTGAGATACACCAAAGTCTTTGTGGCGATGGTGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTATTGACCTTCATAGAAGCTGCCCCAACTGTTCCTATGAACTCTGCCTTAGTTGTTGCCAAGAAATACGTGATGGAAGCATTACACCCCGGGCTGAGCTGAAGTTCCCATATGTAAATAGGGGCTATGATTATATGCATGGTGGGGACCCTCTACCTGTGCCTTGTGATTTAGAGACATCAGAAGGTCATATTGAGCCGTCTACTGTGTGGAAGGCTAAGAGTGATGGAAGCATTAGTTGTGCGCCAAAGGAGTTGGGGGGTTGCGGTAGTGCTGTATTGGAGCTGAGATGCATCTTCCCAGATGGGTGGATATCTGACTTGGAAACCAAAGCTTGCAATATGCTGAAATTATGGGAAATTAAACACACCACTCTTCAGCAAAAAGCAGCAAGTTCAAGCTACACCTTTTTGAGAAAGGAAGCTATTAAAGAAGGCATAAATGACAATAACATATACTGTCCAGACTCAAGTAGCACTAAAAATGAAGGGCTGTTGCTTTTCCAAAAGCATTGGGCTAATGGTGAACCAATTATAGTTCGTGATGTCCTTAAACAGGGAACAGGACTGAGCTGGGAGCCAATGGTAATGTGGCGAGCATTATGTGAAAATATGGTTTCAGAAATCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTAGCTAATTGTGAGGTAGAAATTGATACTCACACATTCTTTAAAGGTTATACAGAGGGAAGAACATACAGAGATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCCGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTTATTCGCTCCTTGCCATTTCAAGAGTACAGCGATCCTCGGACTGGAATTCTCAATCTTGCTGTGAAGTTGCCAGCCCACGTCCTGAAACCTGACATGGGTCCAAAAACATATATTGCATATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCATTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACAGCTGAGGTGATATTAACTGATGAGCAGCACTTTACTATATCAAAGTTGAAAGAAGCACACAGGGCACAAAATGAGAGAGAACAGTGTGCCCAAGAGAGGGTTGCTGACCACCTGGAGGATCGACCTTACAAAGACAACAAAGAACATATAGAAAATAAGGAAGTTCTTGAAGCCAAAAGCATGAAGAAACAACCTATTGAAATTGATGGAAACATCTTTCCAAATAATGTGCTTGAGAGGTACACTTCTCCTGCTACAGAGAATGAATCAATGGAAACTGGTAGTGCCCTATGGGATATCTTTCAGAGAGAGGATTCTGAAAAGTTAGAAACATATCTTAGAAAACACTCAAAAGAATTTAGACATACTTACTGTTCTCCAGTTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACATGGGAACATAAGAAGAAGCTGAAGGAGGAGCTTGGTGTAGAGCCATGGACTTTTGAACAGAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATATCCATGAGTGTCTGCGTTTAACTAAAGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAGCTGGAGATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAAAAGATTTACTGAAGTGTTCTTGA 2631 0.3957 MIEFSRYSKHSGTVQRKADKIPEYGHKKQELKGEETMRCLKKINAVRLEARVTQGEQINQLAKDKILKCSKDFGTTKTKKVEEIYKCDNTKSKSCKKGHETQKLTVSNKKRKFEDDLLNDDFEDEEMLILLKSRTRRRRMNNVMDVGQNPRKCHQCMKKERTFFVPCTKCPKMYCMRCVNKYYPDMSVEEIASSCPFCRKNCNCNACLCSKGMIKTANRDISDYEKAQYLQYMIKLLLPFFEQICHEQSQEEQIEAKLLGKSSFEIEIHQSLCGDGERVYCDHCATSIIDLHRSCPNCSYELCLSCCQEIRDGSITPRAELKFPYVNRGYDYMHGGDPLPVPCDLETSEGHIEPSTVWKAKSDGSISCAPKELGGCGSAVLELRCIFPDGWISDLETKACNMLKLWEIKHTTLQQKAASSSYTFLRKEAIKEGINDNNIYCPDSSSTKNEGLLLFQKHWANGEPIIVRDVLKQGTGLSWEPMVMWRALCENMVSEISSKMSEVKAIDCLANCEVEIDTHTFFKGYTEGRTYRDLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRTGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVILTDEQHFTISKLKEAHRAQNEREQCAQERVADHLEDRPYKDNKEHIENKEVLEAKSMKKQPIEIDGNIFPNNVLERYTSPATENESMETGSALWDIFQREDSEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTWEHKKKLKEELGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTKEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLKDLLKCS* 877
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0086 876 MobiDBLite consensus disorder prediction 10 25 - -
Gso17g0086 876 ProSiteProfiles JmjC domain profile. 573 839 IPR003347 -
Gso17g0086 876 MobiDBLite consensus disorder prediction 1 25 - -
Gso17g0086 876 Gene3D Cupin 434 848 - -
Gso17g0086 876 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 34 875 - -
Gso17g0086 876 Pfam Zinc-finger domain of monoamine-oxidase A repressor R1 151 217 IPR018866 -
Gso17g0086 876 SUPERFAMILY Clavaminate synthase-like 454 870 - -
Gso17g0086 876 Coils Coil 643 663 - -
Gso17g0086 876 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 34 875 IPR045109 GO:0032454|GO:0033169
Gso17g0086 876 SMART cupin_9 554 839 IPR003347 -
Gso17g0086 876 Pfam JmjC domain, hydroxylase 718 822 IPR003347 -
Gso17g0086 876 ProSiteProfiles Zinc finger RING-type profile. 153 199 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0086 Gso-Chr17 857208 862999 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gso17g0086 JmjC 2e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0086 K15601 K21989 gmx:100797860 1644.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2232 7 45955011 45960928 Gso17g0086 17 857208 862999 GST
Gso17g0086 17 857208 862999 Gso15g0934 15 8677734 8682354 PCT