Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0081 ATGAGTCAACTCGGTCTCATATTGCAGGAATCGCTCCGCACCGAGAGAGAAGCAAGAACCATTCTGGGTTTGTTAACGGAGCAAATGGACAGCGTCGGTAGAGGCCAACGGAGGAGACGGACCCTCAAAGAACGCCTCAGATTCACCGGAATCGGCTGTTGTGGAGCCACGTGGGTTTTCCGTCCAATTGTCAGGGACGAAGGAGGAGGGGCACAAGCACAACAACAGCCGCAGGAAACAAATGCGGGTCAAGATCCGAATCATACTGGGCCCGAACATGTGGGTCCGAGTCAGTCGAGTTCGGGAATGAATCTTGCGGCGGCGCTGGCGGCGGAGCGTCAGTTCCGTGAGGGTGAGGGGACGCCTTTGAGGGTGTCGTTGATGCGGCTGTTGGAGGAAACAGAGGGTGGGGATGCGGCGGTGGAAGCAGTGGGGAATGATTGGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCATTCATCCCGTGTGGGCACACATTCTGTAGGGTGTGTTCGAGGGAGCTGTGGTTGAACAGAGGTACTTGTCCCCTTTGCAACCGTTCCATACTCGAGATTCTCGACATCTTCTGA 597 0.5645 MSQLGLILQESLRTEREARTILGLLTEQMDSVGRGQRRRRTLKERLRFTGIGCCGATWVFRPIVRDEGGGAQAQQQPQETNAGQDPNHTGPEHVGPSQSSSGMNLAAALAAERQFREGEGTPLRVSLMRLLEETEGGDAAVEAVGNDWVCCVCMGRKKGAAFIPCGHTFCRVCSRELWLNRGTCPLCNRSILEILDIF* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0081 198 PANTHER OS01G0917900 PROTEIN 17 198 - -
Gso17g0081 198 CDD RING-HC 150 187 - -
Gso17g0081 198 ProSiteProfiles Zinc finger RING-type profile. 150 188 IPR001841 -
Gso17g0081 198 SUPERFAMILY RING/U-box 145 195 - -
Gso17g0081 198 SMART ring_2 150 187 IPR001841 -
Gso17g0081 198 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 17 198 - -
Gso17g0081 198 MobiDBLite consensus disorder prediction 71 103 - -
Gso17g0081 198 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 143 197 IPR013083 -
Gso17g0081 198 MobiDBLite consensus disorder prediction 68 103 - -
Gso17g0081 198 Pfam Zinc finger, C3HC4 type (RING finger) 149 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0081 Gso-Chr17 786404 787532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0081 21 198 C3H Transcription Factor Family AT4G22250 52.427 4.03e-56 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0081 - - gmx:100792613 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2240 7 46035888 46037085 Gso17g0081 17 786404 787532 GST
Gso17g0081 17 786404 787532 Gso15g0948 15 8835833 8836777 PCT
Gso17g0081 17 786404 787532 Gso9g0065 9 607224 608453 PCT