Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0079 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCGAACTCAAACCAAGGTGGTGCGGTTGATAATTCGGGTTCAGGTGCAGCAGCAGCCCCAACGGCTAACGGTGGGGTGGAGGTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGCTGAAAGAAGAAGGGAATAAGAGGTTTCAGAACAAGGACTATGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAATCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCCGCGTGTTTGATGCAGATGAAGCCCATTGATTATGAAGCTGTCATTGTGGAGTGCACCATGGCGCTTCAGGTCCAGCCACGCTTTGTCCGGGCACTTCTCCGCCGGGCTCGGGCGTTCGAGGCCGTTGGAAAGTATGAAATGGCTGTGCAAGATGTGCAGTTCTTGCTGGCAGCTGATCCTGGTAACCGCGATGCCTTGGAGATTGCCCAGAGATTGAGGACTGCATTGGGGCCACGCCAAGAGGCCCAGCAGGACCTCCACAGTCGCCCCTCCCCGGCTGCACTTGGCGCTTCGGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGGCCTTGTTTGCCAGCTCGGCCTGTGGGAAAGAAGGGAGCAAATTCGGTGGTTGGATCTGTTGTGTTGCCTAATAATAACAAGCCAGACAAGTCACAGCCAGTTTTGCCAACCGAGAATGGTCCTGACACCAAGTCCCAGTTGCCAAAACTGGTATTGAAGCCTTCAAATGGTTCTGTGAAGCCACCTAACCGTAAAAAGGAAGATCACAAGGAACTGTCATCGACCATTCATGGGCAGCGTTTGGAGGTTGCAGTTCGGTGGAGACCATTGAAACTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCGGTCAATTGCCATTTTAGAGTACTAAGGGATGTAGTAAGCAAAAGATTTCCTTCGTCAAGTTCTGTTCTGATCAAGTATAAGGATTGTGATGGTGATTTGGTTACTATAACCTCTACTGATGAACTCAGATTGGCAGAGTCTAGTGTTGATAGCCATCTCATGAAAGAACCCGGGGAAGATAAAAGTGATTCTGTAGCAATGCTGAGACTGCATATTGTTGAAGTTAGTCCAGAGCAGGAGCCTCCTTTGTTGGAAGAAGAGGAAGAAAAACCAGTTGAGAATGAAGGGGTCATGGGAGAAGAGAGTGGATCTCATTCTTCTCTCAGTGAATCTGTCTCTGAAGTTGCTGATACCGAGGTTGATAAGACTGCGAAGGATACTCCAAAGGAAAAGCCAGGAACCACAGGAGATACTGAATGCAAAGAAGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAACTTTTCCGCTCTCATGTTGGTATTGATCCAGATGCCCATCTTGACTTGCATGAGCTTGGGATGGAACTTTGTTCTGAGGCACTTGAGGAAACAGTTACTAGTGAGGAGGCTCAGGATCTATTTGACAAGGCAGCTTCAAAATTTCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATTCCCCTGGATGAGTCAGCTGGGAAGGAGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTAGCAAGAGAGAAGTATGAGGAAGCACTCTCGATCAAACCAGACTTTTATGAGGGATTGTTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCAGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAAAAACTGGAGGAACAGAGGGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGAAGAATTATTGAGAAGAAGAAAGAAACAAGGTGCTACTGAAGGTGAGTCCTCAAGTGTTGGAGGTCAGGGTGAAATATCTGCAGAAGAAGCTGCCGAGCAAGCAGCTGTCATGAGATCACAAATTCACCTCTTCTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATGACTGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTTAAGCTTGCAGGAGCTTCTGAGGCTGATGTTTCGATGGTTCTGAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGATAAAAAGGTTGAGAACCCACAGCACAATAAGACTGTTAAACCAGAGATCAACAATGCTAATCAAGTATGA 2331 0.471 MGKSGGRRKKGGSNSNQGGAVDNSGSGAAAAPTANGGVEVLDSSIFLKKANELKEEGNKRFQNKDYAGALEQYESALRLIPKTHPDRAVFHSNRAACLMQMKPIDYEAVIVECTMALQVQPRFVRALLRRARAFEAVGKYEMAVQDVQFLLAADPGNRDALEIAQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVGKKGANSVVGSVVLPNNNKPDKSQPVLPTENGPDTKSQLPKLVLKPSNGSVKPPNRKKEDHKELSSTIHGQRLEVAVRWRPLKLVYDHDIRLAQMPVNCHFRVLRDVVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLMKEPGEDKSDSVAMLRLHIVEVSPEQEPPLLEEEEEKPVENEGVMGEESGSHSSLSESVSEVADTEVDKTAKDTPKEKPGTTGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHLDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGATEGESSSVGGQGEISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMTGWKENLDAATERFKLAGASEADVSMVLKNHCSNGDAKDGDDKKVENPQHNKTVKPEINNANQV* 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0079 776 MobiDBLite consensus disorder prediction 423 447 - -
Gso17g0079 776 Gene3D - 293 363 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 746 763 - -
Gso17g0079 776 Coils Coil 617 637 - -
Gso17g0079 776 Gene3D Tetratricopeptide repeat domain 46 171 IPR011990 GO:0005515
Gso17g0079 776 MobiDBLite consensus disorder prediction 1 33 - -
Gso17g0079 776 ProSiteProfiles PB1 domain profile. 291 383 IPR000270 GO:0005515
Gso17g0079 776 SUPERFAMILY TPR-like 47 181 IPR011990 GO:0005515
Gso17g0079 776 CDD PB1 294 363 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 384 447 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 637 663 - -
Gso17g0079 776 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Gso17g0079 776 MobiDBLite consensus disorder prediction 264 278 - -
Gso17g0079 776 SUPERFAMILY CAD & PB1 domains 289 357 - -
Gso17g0079 776 SMART PB1_new 291 383 IPR000270 GO:0005515
Gso17g0079 776 MobiDBLite consensus disorder prediction 637 677 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 223 278 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 408 422 - -
Gso17g0079 776 Pfam PB1 domain 291 382 IPR000270 GO:0005515
Gso17g0079 776 Gene3D Tetratricopeptide repeat domain 458 667 IPR011990 GO:0005515
Gso17g0079 776 MobiDBLite consensus disorder prediction 9 23 - -
Gso17g0079 776 SUPERFAMILY TPR-like 468 593 IPR011990 GO:0005515
Gso17g0079 776 MobiDBLite consensus disorder prediction 223 256 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 745 776 - -
Gso17g0079 776 MobiDBLite consensus disorder prediction 388 402 - -
Gso17g0079 776 PANTHER - 1 766 - -
Gso17g0079 776 PANTHER PROTEIN CLMP1 1 766 IPR044517 -
Gso17g0079 776 SMART tpr_5 543 576 IPR019734 GO:0005515
Gso17g0079 776 SMART tpr_5 50 83 IPR019734 GO:0005515
Gso17g0079 776 SMART tpr_5 124 157 IPR019734 GO:0005515
Gso17g0079 776 SMART tpr_5 88 123 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0079 Gso-Chr17 767096 770129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0079 47 171 Calmodulin-binding Proteins AT3G25230 29.412 2.85e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0079 - - gmx:100786963 1452.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2242 7 46054955 46058110 Gso17g0079 17 767096 770129 GST