Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0075 ATGCACTTTGTTAGAGGTTCAATGGGAGGCTCATGTTTCCATGCGCTTCGTTTGAGGAGGTTCAAGAGTAAGGCTCTGCCAGAACCTTCTTCATCTTCCAAGACAAGGTTGGATTCTGACTTGGAGAACATGGAGAGAAGAAGGTTTGATAGCTTGGAATCATGGTCCATGATATTGGACTCTGAGAATGTGGAGACATGGGAAGCTTCAAAGGAGGATCAAGAAGAATGGACTGCTGATCTTTCTCAACTTTTCATAGGTAACAAGTTTGCTTCTGGTGCTCACAGTAGGATTTACCGTGGAATTTACAAGCAGAGAGCCGTTGCTGTCAAAATGGTGAGAATTCCCACGCAGGACGAGGAGAGGAGAGGCTTGCTCGAACAGCAATTCAAGTCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCCCAACATAGTGCAGTTTATTGCAGCATGTAAGAAACCGCCGGTGTACTGTATCATAACAGAATACATGTCACAAGGAACACTGAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCAACAGAAACTATATTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCACTCGCAAGGTGTGATTCACAGAGATTTGAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGATTTTGGAACATCGTGTCTTGAAACGCGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCACCGGAGATGATTAAGGAGAAATCTTACACTCGTAAAGTTGATGTTTACAGTTTTGGAATTGTGCTTTGGGAACTCACTACCGCTCTTCTTCCCTTCCAAGGAATGACCCCTGTGCAGGCTGCTTTTGCTGTTGCTGAGAAGAATGAAAGGCCTCCACTACCTGCTAGTTGCCAGCCAGCACTTGCCCATCTGATAAAACGTTGTTGGTCAGCAAACCCTTCAAAGAGGCCAGATTTCAGTGACATTGTGTGTACTCTGGAGAAGTACGATGAGTGTGTGAAGGAGGGTCTACCTCTGACCCATCATTCAGGCCTAGTCAGCAAAAACGTCATTATCGAACGCTTAAAAGGTTGCGTCCCTATGAGCTCTTCCATACCTGTACAAGCTTGA 1146 0.4494 MHFVRGSMGGSCFHALRLRRFKSKALPEPSSSSKTRLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRGLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKSYTRKVDVYSFGIVLWELTTALLPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNVIIERLKGCVPMSSSIPVQA* 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0075 381 SMART serkin_6 84 345 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0075 381 SUPERFAMILY Protein kinase-like (PK-like) 62 338 IPR011009 -
Gso17g0075 381 Gene3D Transferase(Phosphotransferase) domain 1 167 354 - -
Gso17g0075 381 PRINTS Tyrosine kinase catalytic domain signature 162 175 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 PRINTS Tyrosine kinase catalytic domain signature 200 218 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 PRINTS Tyrosine kinase catalytic domain signature 246 256 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 PRINTS Tyrosine kinase catalytic domain signature 265 287 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 PRINTS Tyrosine kinase catalytic domain signature 309 331 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 ProSiteProfiles Protein kinase domain profile. 84 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso17g0075 381 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 17 369 - -
Gso17g0075 381 Pfam Protein tyrosine and serine/threonine kinase 86 337 IPR001245 GO:0004672|GO:0006468
Gso17g0075 381 CDD STKc_MAP3K-like 91 335 - -
Gso17g0075 381 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 17 369 - -
Gso17g0075 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Gso17g0075 381 Gene3D Phosphorylase Kinase; domain 1 73 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0075 Gso-Chr17 745613 750331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0075 8 371 MAP Kinase Kinase Kinase AT1G62400 83.957 0.0 642
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Gso17g0075 PK_Tyr_Ser-Thr 1.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0075 - - gmx:100803225 770.385
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2245 7 46075412 46079844 Gso17g0075 17 745613 750331 GST
Gso17g0075 17 745613 750331 Gso15g0955 15 8917481 8923133 PCT
Gso17g0075 17 745613 750331 Gso9g0073 9 690492 695423 PCT