Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0067 ATGTCTGTCATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCTCAACCGATCACCGTCACCCTTCCAAGCGCAAATTTGACGATGAAGACGACGAGGATTTCTCGGACTTAGTCTGCGTGAGGATGCGGAAAGACGAGGCCAAGGCGGTGAATTCCTGGTCCGCCTCCTCCTCCGACGCCGGCGGCTGCTCCGCCTTGCAGCGCCAGCAGCGATCGCACATCCAGTTCTTCGTGCGAATGATGTGCGGCGGAAACACGATTGTGATGCAAGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCATTGTTCGAGCAGAGGCTTATTTATCGCGGTAAGCAGCTCCAGTGGGAACAGACTCTGGCCGAGTGTTCCATTCAAAACGACGCCAACCTTCAATTAGTTGGTCGTATGCGCAGCACCGAACACCCTCAAGCCTGGCAAGTTATCAACGACATGGTTTCTCTCGTTTACCGTCTTTGCTGCGGCGAAACTGTTCACGATTCCTTGAAGACTATCAAGGGTTTGATCACCAGTTACTTGAACATGACGCCCAGAATTGACAACGACTCTGCCTCTGGTTACTTTCAGATTTTCATGTCTTCTTCTGCCCCTGCCGTGCTTGTTATGCTCTACGTGTCCCCTTACGCAGGTAACAAGGACTGTGCTGATTCCTCTGTTAGGCACTTTTTGAGTTCTTGTCGCACTACTTTGTCTAAGGCATTGCACGGGCAGTGTGCGCGTGTGGTGTTGGAGTTTTGTAAATTGCTTAGGAGAGTGGGCTGTCAAGACCCTTTGTATCTCTATTGTCGGAGTGCTTTTGGGTCCTTGTTGGAAACTGCTGGAGTTTCCTATGCTGCTTCTGCTTCTGGCAATGTTAAGGGGCTGGTTTCGATTCAGGATATTTTCCCCTTTGTTCGTGATCTTGCCAGTAGCTTGTTGAGGGATTTGGACTTGAGTATGGTATCCCCCACGGCCGTGGGGCCTTTGTCAAACGATGTTGGGGATTTTTCTGCATTCTTAATGCCTTTGAGGACTGGAATTAAGGAGCAACAAGCTGTCAAGAATGCTATGCCTCAAGACAAACGCCATAAGGATCTCTTGCTCGCGGAAGAGATTGAACATCTTCATGGTTTGTACATTCAGTTGTTGAACAAAATTGATCAGTGCCTTCAAAAAATGGACCAAAATTTGACTGGCCGGGAAATGATGGAAGGGGATAATCTTTATCCTGCTTGGTCTCATTATCTTTCCATCTTGAAGGAATTGTATCAAATTTCCAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGCATTTTGACACGGCAAAGAAGTGTGCTGTGTCTGCTGATTGTTCGATATGCGAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTGAAAGAGGACTATGAAGAGTTACACGAGATGCTTATTGACAGGTCTCAGTTATTGACCGAGTCATTTGAATACATAGCACGTGCTGAGCCCGAATCTCTGCATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTATTAAGGGAGTGGTTTCTTCTGGTATGTCAAGCAATATTTAATCCACAAAATGCTCTTTTTGTGGCATGCCCAAATGATCAAAGGAGATTTTTCCCTAATCCCGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTATAGAAGATATAAGGGATGCAGATCCTTATCTGTATACAAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTGGGACAGAGGAAAGTGGTTGAGCTCTGCCCTGGTGGAAAAAACCTTGTAGTTAATAGTAAGAACAGGGACAAGTATGTTGATCTTCTTATACAGGATCGATTCGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTGCAGATATTCTTTCAAACTCAAAGTTCCAGCAGTACTTCTTCCAAAGTTTAGACCTCGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCACATACTGAGTATAATGGCTATAAAGATACAGATATTCACATATCTTGGTTTTGGGAGATTGTTGAAAGAATGACAGCAGATCAAAGGAAGGTTCTTTTATTCTTTTGGACATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCTTCTATTGCTGTCATGAAAGATCGTCTTGAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2604 0.4531 MSVIETPAVHHRSGGSTDHRHPSKRKFDDEDDEDFSDLVCVRMRKDEAKAVNSWSASSSDAGGCSALQRQQRSHIQFFVRMMCGGNTIVMQAFPEDSVKSIHERIQSMKGIPLFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCCGETVHDSLKTIKGLITSYLNMTPRIDNDSASGYFQIFMSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRTTLSKALHGQCARVVLEFCKLLRRVGCQDPLYLYCRSAFGSLLETAGVSYAASASGNVKGLVSIQDIFPFVRDLASSLLRDLDLSMVSPTAVGPLSNDVGDFSAFLMPLRTGIKEQQAVKNAMPQDKRHKDLLLAEEIEHLHGLYIQLLNKIDQCLQKMDQNLTGREMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSILTRQRSVLCLLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLTESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDQRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIAIEDIRDADPYLYTSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCPGGKNLVVNSKNRDKYVDLLIQDRFVTSISEQVSHFAKGFADILSNSKFQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKDTDIHISWFWEIVERMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSIAVMKDRLEVITQEHIGCSFGTW* 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0067 867 Gene3D - 67 164 - -
Gso17g0067 867 MobiDBLite consensus disorder prediction 12 33 - -
Gso17g0067 867 SMART ubq_7 75 147 IPR000626 GO:0005515
Gso17g0067 867 CDD HECTc 506 865 IPR000569 GO:0004842
Gso17g0067 867 Pfam Ubiquitin family 78 149 IPR000626 GO:0005515
Gso17g0067 867 SUPERFAMILY Hect, E3 ligase catalytic domain 502 853 IPR035983 GO:0004842
Gso17g0067 867 ProSiteProfiles HECT domain profile. 527 867 IPR000569 GO:0004842
Gso17g0067 867 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 57 865 - -
Gso17g0067 867 SUPERFAMILY Ubiquitin-like 75 163 IPR029071 -
Gso17g0067 867 MobiDBLite consensus disorder prediction 1 33 - -
Gso17g0067 867 Pfam HECT-domain (ubiquitin-transferase) 556 859 IPR000569 GO:0004842
Gso17g0067 867 Gene3D Hect, E3 ligase catalytic domain 627 709 - -
Gso17g0067 867 Gene3D Hect, E3 ligase catalytic domain 750 866 - -
Gso17g0067 867 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 57 865 - -
Gso17g0067 867 PRINTS Ubiquitin signature 86 106 IPR019956 -
Gso17g0067 867 PRINTS Ubiquitin signature 107 127 IPR019956 -
Gso17g0067 867 PRINTS Ubiquitin signature 128 149 IPR019956 -
Gso17g0067 867 Gene3D Hect, E3 ligase catalytic domains 507 731 - -
Gso17g0067 867 SMART hect_3 525 865 IPR000569 GO:0004842
Gso17g0067 867 ProSiteProfiles Ubiquitin domain profile. 75 151 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0067 Gso-Chr17 688916 695199 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0067 75 149 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 1.32e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0067 - - gmx:100796470 1728.76