Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0062 ATGGTTTCCGCGGAGAAAGATTCCAATGAAACTCATCGAACCATCATCGGGAAGTCCATGCGAACGGTGCGCTCCAAAATATTCCAACACGACCACGCCACGTGCGTCTCCGACAACTTAACCGGTTCGCTAATGGAACTCGCATCGCGAAACAACAAATCCGTTAAGTCTTCAATTACGGAGGAGCAACTCCTCGAGCTCTCTCAAGCTCTGAGCGATTTCTCCGCCTGTAGCAGCGATATCTCCGGGGAGCTCCAGAGACTCGCCACCGTCTCCTCCTCCCAACCTCCTGCTGCTGCTGCTGACATCCACGGCCAACCCCAACCTGAGCCCGAGCCGTGCCTAGGGTTTCTCCAGAGGGAGAGCTTCTCCACTGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTCAAGATCTGCGTCGACGGACTTCTCTCGCCGTCGTTGGCCGTGAAGCGATCGGCGGCGGCCAAGCTGAGGCTGTTGGCGAAGAACCGAGCCGACAACCGCGCTCTCATCGGCGAGTCCGGTGCGGTGGCTGCTCTGGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACGCAGGAACACGCGGTGACGGCGTTGCTGAACCTGTCTCTTCTGGAAGAGAACAAGGCGCTTATAACGAATGCGGGTGCGGTGAAGTCGCTGATATACGTGCTGAAAAGAGGGACGGAGACTTCCAAGCAGAACGCGGCGTGCGCGCTCATGAGTCTGGCGCTGGTGGAAGAGAACAAGAGGTCGATCGGGACTTGCGGGGCGATACCACCGCTGGTGGCGCTGCTGTTGGGTGGGTCCCAGAGAGGGAAGAAGGACGCGCTGACGACGCTGTACAAGCTGTGTTCAGTGAGGCAGAACAAGGAGAGGGCGGTGAGTGCCGGGGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGGATGGCGGAGAAGGCGATGGTGGTGCTGAACAGCTTGGCGGGGATTGAGGAGGGGAAGGAGGCCATTGTGGAAGAAGGTGGGATTGCTGCGCTTGTGGAAGCGATTGAGGTTGGGTCGGTGAAGGGGAAGGAGTTCGCTGTTTTGACTCTTTATCAACTCTGTGCTGAAACCGTTACCAACAGAGCCCTTCTCGTCAGGGAGGGAGGGATTCCGCCTCTCGTTGCTCTTTCTCAGAGCTCCCCTGTTCGAGCTAAGCTCAAGGCTGAGACACTCCTTGGATATTTGAGAGAATCAAGACATGAAGCTTCATGTTCAAGTCCGTAG 1278 0.5829 MVSAEKDSNETHRTIIGKSMRTVRSKIFQHDHATCVSDNLTGSLMELASRNNKSVKSSITEEQLLELSQALSDFSACSSDISGELQRLATVSSSQPPAAAADIHGQPQPEPEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLLSPSLAVKRSAAAKLRLLAKNRADNRALIGESGAVAALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKRGTETSKQNAACALMSLALVEENKRSIGTCGAIPPLVALLLGGSQRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMAEKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEVGSVKGKEFAVLTLYQLCAETVTNRALLVREGGIPPLVALSQSSPVRAKLKAETLLGYLRESRHEASCSSP* 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0062 425 Gene3D - 281 422 IPR011989 -
Gso17g0062 425 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 15 421 - -
Gso17g0062 425 Pfam Armadillo/beta-catenin-like repeat 171 208 IPR000225 GO:0005515
Gso17g0062 425 Pfam Armadillo/beta-catenin-like repeat 253 291 IPR000225 GO:0005515
Gso17g0062 425 PANTHER U BOX DOMAIN-CONTAINING 15 421 - -
Gso17g0062 425 SUPERFAMILY ARM repeat 137 414 IPR016024 -
Gso17g0062 425 SMART arm_5 251 291 IPR000225 GO:0005515
Gso17g0062 425 SMART arm_5 375 415 IPR000225 GO:0005515
Gso17g0062 425 SMART arm_5 292 332 IPR000225 GO:0005515
Gso17g0062 425 SMART arm_5 210 250 IPR000225 GO:0005515
Gso17g0062 425 SMART arm_5 333 373 IPR000225 GO:0005515
Gso17g0062 425 SMART arm_5 169 209 IPR000225 GO:0005515
Gso17g0062 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 303 345 IPR000225 GO:0005515
Gso17g0062 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 222 IPR000225 GO:0005515
Gso17g0062 425 Gene3D - 126 280 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0062 Gso-Chr17 653906 656884 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0062 78 418 U-box Gene Family AT2G23140 45.455 6.20e-80 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0062 - - gmx:100801642 793.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2259 7 46201769 46203872 Gso17g0062 17 653906 656884 GST
Gso17g0062 17 653906 656884 Gso15g0976 15 9090353 9093423 PCT
Gso17g0062 17 653906 656884 Gso9g0093 9 848013 850684 PCT