Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0052 ATGGGTGGTGATGAGAGTCGAGAATCGTTGCTTTCAGAAGCAAGAGATCATTCTCATCTCAATGAGATAAGTGACCTCCAGAGGAGAAGGCCACGGCGTGGTAAATCTTCAGATAAAGAGAACAACCTCAAAGAAAAAAATGTGGTCCAAAACCCTTTACACTCTCAATATATAGATCCAAAACAAGAAGCAGAATTCCATTTCAAGACAGTGTTGTTGTGGCTAGCTGCATACCTAGGAGGAGGAACACTATGCTTCCTTCTCACAAGTCATCAGATCAAGGGCATTAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTGACGATGACTACTGTTGGATATGGAGATCTTGTGCCAGATAGCCAATTGGCAAAACTTCTTGCATGCATTTATGTCTTCACAGGCATGGCTCTTGTAGGGTTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAGCAGGAAATATTTCTAGTTAGAACCTTATTCAAGGGTGAAAATTTTGGTCCAGAAGAGCTTTCCAAAGAGGTCGAAACTAACAAAGCAAAATACAAATTCATTCTCGCAGCATCCGTCTTTTTGGTGCTTATGATTTCAGGGACTATTTTTCTGCATTATATTGAAAATCTAGATTTTGTTGATGCCCTATATTGTGTTTGTTCCACAGTCACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTACTATTGGCCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGTACCATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAATTTTATACTGAAGAAAGACAGAAAGCAATGGCTAAAATAGTTCTTACACGAAAGTTGTCACTCCTTGATCTTGAGGCGGCTGATCTTGATGGAGACCATGTTGTCAGTGCCACAGAGTTCGTATTATACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTTAGTTGTGATGGACATTTTTAGAAAACTAGATGTTGATAAATCAGGAACCCTGACAGAAGCTGATCTAAAATATTCTGAATCATCTAAACCATAG 1059 0.3909 MGGDESRESLLSEARDHSHLNEISDLQRRRPRRGKSSDKENNLKEKNVVQNPLHSQYIDPKQEAEFHFKTVLLWLAAYLGGGTLCFLLTSHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLAKLLACIYVFTGMALVGLILSKAADYIVEKQEIFLVRTLFKGENFGPEELSKEVETNKAKYKFILAASVFLVLMISGTIFLHYIENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRAFAVFWILSSTICLAQSFAYLAEFYTEERQKAMAKIVLTRKLSLLDLEAADLDGDHVVSATEFVLYKLKEMGKINQEDILVVMDIFRKLDVDKSGTLTEADLKYSESSKP* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0052 352 Gene3D - 289 347 - -
Gso17g0052 352 Pfam Ion channel 195 268 IPR013099 -
Gso17g0052 352 Pfam Ion channel 76 154 IPR013099 -
Gso17g0052 352 PRINTS Two pore domain K+ channel signature 110 138 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso17g0052 352 PRINTS Two pore domain K+ channel signature 227 236 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso17g0052 352 SUPERFAMILY Voltage-gated potassium channels 182 283 - -
Gso17g0052 352 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Gso17g0052 352 SUPERFAMILY Voltage-gated potassium channels 67 155 - -
Gso17g0052 352 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 17 345 - -
Gso17g0052 352 ProSiteProfiles EF-hand calcium-binding domain profile. 319 352 IPR002048 GO:0005509
Gso17g0052 352 Gene3D - 53 164 - -
Gso17g0052 352 Gene3D - 173 287 - -
Gso17g0052 352 SUPERFAMILY EF-hand 289 346 IPR011992 -
Gso17g0052 352 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 17 345 IPR003280 GO:0005267|GO:0016020|GO:0071805
Gso17g0052 352 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0052 Gso-Chr17 598449 601153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0052 50 350 Ion Channels AT5G55630 55.482 7.91e-117 341
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0052 K05389 - gmx:100799492 685.641