Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0046 ATGGGCAATGTGAACGTGACTCCTGAAGAAGAAGAAGTTTCTGCAAGTGCAAGGGCAACCGATGAGAACGCCATGCCTCAGTCTCCTCCCACCTCTCCTACGGCTACCCATTTCCCCCTCATATTCGCTCCTCAGGTTCCGGTGGTTCCGCTACAAAGACCTGATGAGATGCATGTTCCAAGTTGTTCCTGGATGGAGACAACTTCAGGGTATGAAGATGTGTACCGCGAAGTAGGAATTCCAACAGTGATTACTTGGAGTTATGATGGAAAGGAAGTAGCTGTGGAGGGATCGTGGGATAATTGGAAAACAAGAATGCCCCTGGAGAGATCAGGGAAGGACTTTGCAATAATGAAGGTTCTGCCATCTGGTGTTTACCAGTACAGATTTATTGTGGATGGACGGATGAGGTACACTCCAGACTCGCCTTGGGCCCAAGATGATGCTGGGGATGCTTACAACATCTTGGACTTACAGGATTATGTTCCTGAAGACATTGGAAGCATTTCTAGTTTTGAGCCTCCTCAATCACCAGACTCGAGTTATGATAACTTATATCTTAGTTCTGAAGATTATGCTAAGGAGCCACCATTAGTTCCTCCACTCTTGCAAATGACACTGCTAAATGTGCCTGCAACAAATATGAAAATCCAACCTCCTATGTCAAGACCTCGACATGAAGTGCTGAATCATCTTTACGCACAAAAAGGAAAGAGCAGTCCTTCAGTGGTTGGCCTTGGTACAACTCATCGGTTTCTAGCCAAATATGTCACTGTTGTGCTGTACAAGTCGTTGCAAGGTAAACCATAA 810 0.4568 MGNVNVTPEEEEVSASARATDENAMPQSPPTSPTATHFPLIFAPQVPVVPLQRPDEMHVPSCSWMETTSGYEDVYREVGIPTVITWSYDGKEVAVEGSWDNWKTRMPLERSGKDFAIMKVLPSGVYQYRFIVDGRMRYTPDSPWAQDDAGDAYNILDLQDYVPEDIGSISSFEPPQSPDSSYDNLYLSSEDYAKEPPLVPPLLQMTLLNVPATNMKIQPPMSRPRHEVLNHLYAQKGKSSPSVVGLGTTHRFLAKYVTVVLYKSLQGKP* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0046 269 CDD E_set_AMPKbeta_like_N 81 157 - -
Gso17g0046 269 MobiDBLite consensus disorder prediction 20 35 - -
Gso17g0046 269 Pfam Glycogen recognition site of AMP-activated protein kinase 80 159 IPR032640 -
Gso17g0046 269 SUPERFAMILY AMPKBI-like 162 264 IPR037256 -
Gso17g0046 269 SMART AMPKBI_2 175 265 IPR006828 GO:0005515
Gso17g0046 269 MobiDBLite consensus disorder prediction 1 37 - -
Gso17g0046 269 Gene3D Immunoglobulins 75 162 IPR013783 -
Gso17g0046 269 SUPERFAMILY E set domains 80 165 IPR014756 -
Gso17g0046 269 Gene3D - 168 265 - -
Gso17g0046 269 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-2 1 266 - -
Gso17g0046 269 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 266 IPR043554 -
Gso17g0046 269 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 193 263 IPR006828 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0046 Gso-Chr17 542919 545503 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0046 K07199 - gmx:100805688 550.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso17g0046 17 542919 545503 Gso15g0997 15 9285204 9288204 PCT
Gso17g0046 17 542919 545503 Gso9g0116 9 1015752 1019070 PCT