Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0038 ATGCAGCAGTGGCGGAGGTTGAATAGAAGTGTCTGGAATCCAATCCGAAGTGGTTTGGTGTTTGCGCGTTCACTCCTCTCTCCTCCCCTCCTGCAATTACCCAAGCGATCTCTCTCTCTCTCTCTCTCTCTGTTTCATATCATGAAACGCTCAAACGACGACGTCGCTGCCCCCGTCCCCGCCTCAACCTCCAAGCCAGTGTTCCTAACCAAAGCCCAACGCGAGCAATTGGCTCTCCAGCGCCGCCAGGAAGAAGTCGCCGACCAGAAGCGCCGCCAGGAGCAGCTCCTCTCCCGCAACCACTCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGAAAGAGACCGAGACCACCACCGAGACCGGGACCGCGATCGTGACAGAGACAGAGAACGCGAGCGCGAGAGGGCCCGCGATCGGGATCGCGAAGCCGAACGGCGCAACAGAGAGAGGGAGCGCGAAGAGGAGAGCCGGGCCCGCGAACGCGCCCGGTTGGAGAAACTCGCGGAGCGTGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTGGGCTCGAAAAAGCCGAAGAAGCGCGTCATCAAGCCCAGCGAGAAGTTCCGTTTCTCCTTCGACTGGGAGAACACCGAGGACACCTCGCGCGACATGAACTCCCTTTACCAGAACCCGCACGAGGCCCAGCTCCTCTTCGGCCGCGGGTTCCGCGCGGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAACGAGAAGGACATGCGAGACCAAATCCGGAAGAAAGACGGCCTGGAGGAGAGGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCTGCCGCCGACCTATACGACACCTTCGACATGCGCGTTGACCGGCACTGGAGCGAGAAGAAGCTGGAAGAGATGACAGAGAGGGATTGGCGTATCTTCAGAGAAGACTATAACATCTCCTACAAGGGTTCCAAGATTCCTCGTCCTATGAGGAGCTGGAATGAGAGCAAATTGACCAACGAGCTTCTGAAGGCGGTTGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAGATGGCTGCCATTCCACTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGTAAAACCGCCGCCTTTGTGCTTCCCATGCTGAGTTACATCACCCGCCTTCCTCCCATAAGCGAAGACAACGAGGCTGAGGGTCCCTATGCTGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTCAAGTTTGCTCAGTATTTGGGCATCAAGGTCGTCTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGGTTTAAGATTAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGTTTGGAGCGCCGCTATGCTGTGCTCAACCAGTGCAACTATGTTGTTCTTGATGAGGCCGATCGTATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTCGATGCCATGCCTTCCAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGACGAGAAGAAGATTTACCGCACCACCTATATGTTCAGCGCCACCATGCCACCTGCTGTGGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTGGTCACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGGCCGAGAAGTTTTCCAAGCTTCATAGGTTGCTTGATGAGCTTAACGACAAGACTGCAATTGTGTTTGTTAACACCAAGAAGAATGCGGATCATGTTGCCAAGAATTTGGATAAGGATGGGTATCGCGTGACTACTTTGCACGGAGGGAAGTCGCAGGAGCAGAGGGAGATCAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGGATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACCACATTCTTGACTCTTCACGACTCTGATGTCTTCTATGACCTCAAGCAGATGCTTATTCAAAGTAACAGTCCTGTTCCACCTGAACTGGCAAGGCACGAAGCTTCAAAATTCAAGCCAGGAACTATTCCAGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2262 0.5424 MQQWRRLNRSVWNPIRSGLVFARSLLSPPLLQLPKRSLSLSLSLFHIMKRSNDDVAAPVPASTSKPVFLTKAQREQLALQRRQEEVADQKRRQEQLLSRNHSSDPKPSSDRDRDRERDRDHHRDRDRDRDRDRERERERARDRDREAERRNREREREEESRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKDMRDQIRKKDGLEERPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLTNELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKEAEKFSKLHRLLDELNDKTAIVFVNTKKNADHVAKNLDKDGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLHDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFAH* 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0038 753 Pfam DEAD/DEAH box helicase 358 548 IPR011545 GO:0003676|GO:0005524
Gso17g0038 753 PANTHER - 136 746 - -
Gso17g0038 753 MobiDBLite consensus disorder prediction 721 753 - -
Gso17g0038 753 CDD DEADc_DDX23 344 560 - -
Gso17g0038 753 Coils Coil 72 99 - -
Gso17g0038 753 Coils Coil 137 181 - -
Gso17g0038 753 Coils Coil 251 271 - -
Gso17g0038 753 CDD SF2_C_DEAD 571 700 - -
Gso17g0038 753 MobiDBLite consensus disorder prediction 79 167 - -
Gso17g0038 753 MobiDBLite consensus disorder prediction 728 753 - -
Gso17g0038 753 SMART helicmild6 610 691 IPR001650 -
Gso17g0038 753 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 488 496 IPR000629 -
Gso17g0038 753 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 364 559 IPR014001 -
Gso17g0038 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 409 712 IPR027417 -
Gso17g0038 753 Gene3D - 564 751 IPR027417 -
Gso17g0038 753 Pfam Helicase conserved C-terminal domain 583 691 IPR001650 -
Gso17g0038 753 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 136 746 - -
Gso17g0038 753 SMART ultradead3 352 574 IPR014001 -
Gso17g0038 753 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 586 730 IPR001650 -
Gso17g0038 753 MobiDBLite consensus disorder prediction 244 282 - -
Gso17g0038 753 Gene3D - 294 563 IPR027417 -
Gso17g0038 753 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 333 361 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0038 Gso-Chr17 461307 463932 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0038 331 713 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 1.13e-62 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0038 K12858 - gmx:100792810 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2279 7 46395548 46398138 Gso17g0038 17 461307 463932 GST