Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0022 ATGGCAATTGCAGCTGCAAACTCATCACCCACCATGAGCCTCAGCCATAGCCAGAGCCAAGAGGATGCCACCACCGCCTCCACCACCAACAAGCCCGTCGACGTCGACGATAATGATGATCACGAGCACGACATGGTCATGCCCGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAGCTTATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCCGCCTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCCAGAGATAGGAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACCGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCTAAAGGCATACGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGTGTGTACAAGAGAGCTGGAGTGGAGGACCATCCTTCCCTCCCTCGCTGCCTCCCAACGAGGCCATCCTCGTCAAGGGCTTCTCATGACAATAATAAGAAGCACAATGAAATGGTTCAGCACAACATCAACATGGGATTCGTGGGACAATTAAAGCCGCCAACAACTGAACACATAGTTGACAAAATTAATGAAACGGAAGCAAGCAGTGATGTCAACACAGCTCTTGGACTTTCCAAATACAATGCTGCTTACCGTGCTGCAATGGGAGCACTCAGCACCACAATGGCACTTCCAGTTGTTCCAATGGATCATGAGGAAGGCTTGATGATGATGCAGCAGCAATCTAAGCAAGCTGCAGCACATGTTCCAACAATCTTCTCTGCTGGGCCTTCCAGTTCCAACAACAGTGGAGTGGTGAATATGGATGATCTGAATAGGCTAATGAGTTATCAACAGCAGTACTACAATGTTCAAAGCCAAAGCCATCCCAATCAGTTCTCCACTTTGCTGATGCAACCTTCAGCGGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCACCCACCTTCTCTGACCGACTCTGGGACTGGAATCCAATCCCTGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1212 0.4876 MAIAAANSSPTMSLSHSQSQEDATTASTTNKPVDVDDNDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASHDNNKKHNEMVQHNINMGFVGQLKPPTTEHIVDKINETEASSDVNTALGLSKYNAAYRAAMGALSTTMALPVVPMDHEEGLMMMQQQSKQAAAHVPTIFSAGPSSSNNSGVVNMDDLNRLMSYQQQYYNVQSQSHPNQFSTLLMQPSAVVSLSSLPNPLPPTFSDRLWDWNPIPEPPNQEYSNMSFK* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0022 403 MobiDBLite consensus disorder prediction 1 40 - -
Gso17g0022 403 ProSiteProfiles NAC domain profile. 46 193 IPR003441 GO:0003677|GO:0006355
Gso17g0022 403 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 27 398 - -
Gso17g0022 403 Pfam No apical meristem (NAM) protein 48 172 IPR003441 GO:0003677|GO:0006355
Gso17g0022 403 MobiDBLite consensus disorder prediction 199 220 - -
Gso17g0022 403 MobiDBLite consensus disorder prediction 1 32 - -
Gso17g0022 403 SUPERFAMILY NAC domain 46 192 IPR036093 GO:0003677|GO:0006355
Gso17g0022 403 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 27 398 - -
Gso17g0022 403 Gene3D NAC domain 55 196 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0022 Gso-Chr17 311489 314052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0022 45 209 NAC Transcription Factor Family AT2G02450 92.121 1.38e-113 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Gso17g0022 NAM 4.1e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0022 - - gmx:100792622 781.171