Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0016 ATGGAACTTTCGAGTCAAGAAGGAGAAATCCCAATCCCAATAAACAGCAGTACTACATATGGACATGGTAATGGACATGGACATGGTCATGGACACGGACTCATGATTCACCATGACCATAACCACATTATATCCTCCTCGGCACCTTCAAACGGCATACCAACTACTATGCAGCAGCAGGAGGAGGAGGAGGAGGAGGAGGATCGCTACAAGAAAGTGGTTAGGTACAGAGAATGCCTGAAGAACCATGCAGCAGCCATGGGAGGGAATGCAACTGATGGGTGCGGTGAGTTCATGCCAAGTGGAAAAGAAGGGAGCATAGAGGCACTGAACTGCTCTGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAGGGTGAGCCTCAGCATCATCTCAACATCAACAGAAGAAGACTCATTCTGGGCCCTCATCCTGAGGCTCTTGGCTACCCTACAGCTGCAGCCAGAAGTGTCCCACCACACCAGATGATAATGCCCTACAACATTGGAATTGGACACCACCTCCCTTCAGAATCCGATGAACAAGAAGATGCTGCTGCTGGCGCTGGAATGGTGCAGCTCAGTAGCCGACCCAGCTCTGCCCAGCTGGTCAAGAAAAGATTCAGGACCAAGTTCAGCCAGGACCAGAAGGACAAAATGCTCAACTTTGCTGAGAAGGTTGGCTGGAAAATCCAGAAGCAAGAGGAGTCTGTGGTGCAACACTTCTGCCAAGAGATTGGGGTCAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAATAAGCACAATCTCGCCAAAAAGATCAACCCCCCTACTACTACTGCACCACCACCACCACCACCACCACCTCCTTAA 861 0.5017 MELSSQEGEIPIPINSSTTYGHGNGHGHGHGHGLMIHHDHNHIISSSAPSNGIPTTMQQQEEEEEEEDRYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGKEGSIEALNCSACHCHRNFHRKEVEGEPQHHLNINRRRLILGPHPEALGYPTAAARSVPPHQMIMPYNIGIGHHLPSESDEQEDAAAGAGMVQLSSRPSSAQLVKKRFRTKFSQDQKDKMLNFAEKVGWKIQKQEESVVQHFCQEIGVKRRVLKVWMHNNKHNLAKKINPPTTTAPPPPPPPPP* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0016 286 MobiDBLite consensus disorder prediction 265 286 - -
Gso17g0016 286 MobiDBLite consensus disorder prediction 43 68 - -
Gso17g0016 286 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 207 263 IPR006455 -
Gso17g0016 286 Gene3D - 194 268 - -
Gso17g0016 286 MobiDBLite consensus disorder prediction 1 23 - -
Gso17g0016 286 Pfam ZF-HD protein dimerisation region 74 126 IPR006456 -
Gso17g0016 286 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 269 - -
Gso17g0016 286 MobiDBLite consensus disorder prediction 1 31 - -
Gso17g0016 286 MobiDBLite consensus disorder prediction 43 58 - -
Gso17g0016 286 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 76 125 IPR006456 -
Gso17g0016 286 SUPERFAMILY Homeodomain-like 200 268 IPR009057 -
Gso17g0016 286 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 5 269 - -
Gso17g0016 286 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 75 126 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0016 Gso-Chr17 246948 249128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0016 71 271 ZF-HD Transcription Factor Family AT1G14440 58.173 8.76e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Gso17g0016 ZF-HD_dimer 3.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0016 - - gmx:100803037 509.99
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso7g2304 7 46636234 46638544 Gso17g0016 17 246948 249128 GST