Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso17g0009 ATGACGCCGCTGATCCTGCATGCTGGGAAAACCAACAAAAATTCTTACAAGACACTCATTGCAGCCGAGTATGCTGGCGTCCAAGTTGATTTTGCCCCTAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATCAATCCTATTGGCAAGGTTCCTGTGCTGGAAACCCCCGATGGTCCAATATTCGAGAGCAATGCCATTGCTCGCTATGTTACCCGGCTGAAAGGTGATAACACTTTGTATGGATCTTCCTTGATTGAATATGCCCACATTGAACAGTGGATTGATTTTTCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAGTTGGACGAGGACCATATCTTCCTCCAGCTGAGGAGGCTGCAATTTCTGCACTAAAGAGAGCTTTGGGTGCTTTGAACACACACCTTGCTTCCAATACTTACCTGGTTGGGCATTCTGTGACCCTGGCCGACATCATAATGACATGCAATTTGTATTTGGGTTTTGCAAACATCCTGGTTAAGAGCTTTACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCAAACTTCCGAAAAATAATTGGGCAGGTCAAGCAGGCTGAAGCTATTCCTCCTGTTCAATCTGCAAAGAAGCCTTCCCAGCCAAAAGAATCCAAGGCCAAGGCAAAAGATGAACCAAAGAAAGAGGCAAACAAGGTGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTCCGATGATACTGGATGAGTGGAAAAGACTCTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGATTTTGGGACATGTATGATCCCGAGGGATACTCTCTCTGGTTTTGTGATTACAAATACAACGACGAGAATACTGTTTCTTTTGTGACATTGAACAAGGTTGGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGTTCCACCATTTAAGGTGAAGGGGCTGTGGCTTTTCCGTGGGCAAGAAATCCCAAAATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAATGGACTAAGGTTGACATCTCTGATGAAGCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTATGAACCTTTTGAGGGCGAGGCTCTTTTGGATGCCAAGTGCTTCAAGTGA 1263 0.4434 MTPLILHAGKTNKNSYKTLIAAEYAGVQVDFAPNFEMGVSNKTPEFLKINPIGKVPVLETPDGPIFESNAIARYVTRLKGDNTLYGSSLIEYAHIEQWIDFSSLEIDANIIKWYAPRVGRGPYLPPAEEAAISALKRALGALNTHLASNTYLVGHSVTLADIIMTCNLYLGFANILVKSFTSEFPHVERYFWTLVNQPNFRKIIGQVKQAEAIPPVQSAKKPSQPKESKAKAKDEPKKEANKVPEKPKEEAEEEAPKPKPKNPLDLLPPSPMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVGGFLQRMDLARKYAFGKMLVIGSVPPFKVKGLWLFRGQEIPKFVIDECYDMELYEWTKVDISDEAQKERVNQMIEDYEPFEGEALLDAKCFK* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso17g0009 420 SMART EF1G_2 259 367 IPR001662 GO:0003746|GO:0006414
Gso17g0009 420 Pfam Glutathione S-transferase, C-terminal domain 131 198 IPR004046 -
Gso17g0009 420 Pfam Glutathione S-transferase, N-terminal domain 4 76 IPR004045 -
Gso17g0009 420 SUPERFAMILY Thioredoxin-like 1 86 IPR036249 -
Gso17g0009 420 SFLD Main (cytGST) 6 191 - -
Gso17g0009 420 SUPERFAMILY eEF1-gamma domain 260 420 IPR036433 GO:0003746|GO:0006414
Gso17g0009 420 CDD GST_N_EF1Bgamma 6 78 - -
Gso17g0009 420 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 260 420 IPR036433 GO:0003746|GO:0006414
Gso17g0009 420 Gene3D Glutaredoxin 1 75 - -
Gso17g0009 420 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 2 83 IPR004045 -
Gso17g0009 420 SUPERFAMILY GST C-terminal domain-like 74 215 IPR036282 -
Gso17g0009 420 CDD GST_C_EF1Bgamma_like 91 211 - -
Gso17g0009 420 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 88 216 IPR010987 -
Gso17g0009 420 Pfam Elongation factor 1 gamma, conserved domain 259 367 IPR001662 GO:0003746|GO:0006414
Gso17g0009 420 MobiDBLite consensus disorder prediction 224 260 - -
Gso17g0009 420 SFLD Glutathione Transferase (cytosolic) 6 191 IPR040079 -
Gso17g0009 420 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 260 420 IPR001662 GO:0003746|GO:0006414
Gso17g0009 420 PANTHER - 4 420 - -
Gso17g0009 420 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 4 420 IPR044628 GO:0004364
Gso17g0009 420 MobiDBLite consensus disorder prediction 214 268 - -
Gso17g0009 420 Gene3D - 81 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso17g0009 Gso-Chr17 163131 165872 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso17g0009 4 420 Eukaryotic Initiation Factors Gene Family AT1G57720 77.938 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso17g0009 K03233 - gmx:547637 788.875