Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1780 ATGGGACGCGAAGCGACGAAGAAGAAGAAGATGAAGAAGAATGCAAAATCTGGGGGTTTTGAATCACTTGGTCTGAATCCCAATGTGTTCAAAGGAATCAAGCGCAAAGGGTACAAAGTGCCCACTCCAATTCAGCGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGACGTCGTTGCCATGGCTCGCACGGGCTCTGGCAAAACGGCAGCGTTTCTTGTCCCCATGCTTCACCGCCTCAATCAGCATATCCCTCAGTCTGGTGTCAGAGCCCTCATCCTATCCCCTACCAGGGACTTGGCCCTTCAAACTCTTAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGTGTTAGTTTGTTAGTTGGTGGAGATAGTATGGAGAGTCAGTTTGAGGAATTAGCTCAGAGTCCTGACATCATAATTGCCACTCCTGGTAGGCTCATGCACCATTTGTCTGAGGTTGATGACATGTCATTGCGCAGCGTCGAGTATGTTGTTTTCGACGAGGCTGATTGTTTATTTGGCATGGGTTTCGCCGAGCAGTTGCATCAGATTCTTGCTCAGCTCGGGGAGAACCGTCAGACCTTGCTTTTCAGTGCCACACTGCCCAGTGCTCTTGCTGAATTTGCCAAGGCTGGCTTGAGAGACCCTCAGCTTCTCCGCCTCGACTTGGAAACTCGAATTAGCCCTGACTTGAAGCTTGCCTTCTTCACTTTGAGGCAGGAAGAGAAGTACTCCGCGTTGCTGTATTTGATTAGGGAGCACATTGGTTCTGATCAGCAGACATTGATTTTTGTGTCCACCAAACATCATGTGGAGTTTCTCAACCTTTTGTTTCGTGAAGAGGGTATCGAGCCATCTGTGTGTTATGGCGACATGGATCAAGATGCTCGCAAAATCCATGTATCAAGGTTTAGGTCTAGAAAGACAATGTTGTTGATTGTGACAGACGTTGCGGCCCGGGGCATTGACATTCCATTACTTGATAATGTTATCAATTGGGACTTTCCCCCCAAGCCTAAAATATTTGTCCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGAACTGGTACTGCATATTCTTTTGTGACTCCTGAGGATATGGCTTACCTTTTGGATCTTCATTTGTTTCTTTCGAAACCAATCAAACCTGCTCCCACCGAAGAAGAGGTCTTGCAGGATATGGAAGGAGTATTGTCTAGATGTGAACAGGCAATGGCAAATAGAGAAACTATTTATGGTCGTTTCCCGCAAAAAGTCATCGACCTTGTTTCAGACAGAGTTAGGGAAATTATTGATACTTCTGCGGAACTGGAATTGTTGCAGAGGACCTGTAAAAATGCATTTCGTTTGTATTCAAAAACAAAACCCTTACCCGCAAAGGAGTCCATTAGAAGAGTAAAGGATTTGCCTCACGAAGGGCTGCATCCAATGTTCATGAATGTGTTGGAAACAGGGGAGTTAACGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAAGGGGAAGCAGCTAAATTAAAGCATCAACAGGGCCCTTCTGGCCAATGGGCCGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCAGCAGTCGAAGAGTAATAAGGAAAAGGAGGAAATTCAATTGGAAATCAGTCCTTCCATGGAGAAAGGAAGAAAAGTTTTAGCAGCATGTGGTTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATCACTATATAAGTTCAATACCAAAAAATCAACATATGGAGGCTGGCCTTTCAGTAAAAGCTAATGAAGACTTTGCTTCTAATAGATTGGAAGCAGCTGTCCTCGATCTAGTGGCAGATGATGGTGCTGGCATTCAGAAGCAAAGATCTATGTATCACTGGGATAAGAGGGGTAAAAAGTACATCAAGTTAAACAATGGTGATCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACAAAGGCAAACAAGACTGGTATATATAAGAAGTGGAAAGAACGCTCACATGTTAGGATATCACTTAAAGGGACAAATAATGGTGATCCTCAGGATTCAACAAGTTTGACAGGATCTTACCAAAGAGGTCGTAGTAATTTTAAAGGCAGCAAGAAGCAGCATTCAATGCCCAATGCTCATGTGCGTTCAGAACTCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGACAAAGGCCAACAGGGTTTCTTATATAAAGAGCAAGTCGACAAAGGGTAAAAGGTTTGGTAAAAATGGTAAAAAAAGAAAAGGCAAATAG 2340 0.441 MGREATKKKKMKKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMLHRLNQHIPQSGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMSLRSVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLLRLDLETRISPDLKLAFFTLRQEEKYSALLYLIREHIGSDQQTLIFVSTKHHVEFLNLLFREEGIEPSVCYGDMDQDARKIHVSRFRSRKTMLLIVTDVAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTPEDMAYLLDLHLFLSKPIKPAPTEEEVLQDMEGVLSRCEQAMANRETIYGRFPQKVIDLVSDRVREIIDTSAELELLQRTCKNAFRLYSKTKPLPAKESIRRVKDLPHEGLHPMFMNVLETGELTALAFSEHLKKFRPKQTILEAEGEAAKLKHQQGPSGQWADVMKRKRAIHENIINLVHEQQQSKSNKEKEEIQLEISPSMEKGRKVLAACGSKRKPQSFKDEDHYISSIPKNQHMEAGLSVKANEDFASNRLEAAVLDLVADDGAGIQKQRSMYHWDKRGKKYIKLNNGDRVAANGKIKTESGAKTKANKTGIYKKWKERSHVRISLKGTNNGDPQDSTSLTGSYQRGRSNFKGSKKQHSMPNAHVRSELKDMDQIRKERQTKANRVSYIKSKSTKGKRFGKNGKKRKGK* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1780 779 Gene3D - 237 466 IPR027417 -
Gso16g1780 779 MobiDBLite consensus disorder prediction 1 20 - -
Gso16g1780 779 SMART ultradead3 37 244 IPR014001 -
Gso16g1780 779 CDD DEADc_DDX54 18 223 - -
Gso16g1780 779 Gene3D - 2 225 IPR027417 -
Gso16g1780 779 SMART helicmild6 275 356 IPR001650 -
Gso16g1780 779 Pfam Helicase conserved C-terminal domain 246 356 IPR001650 -
Gso16g1780 779 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 29 5 776 - -
Gso16g1780 779 CDD SF2_C_DEAD 244 365 - -
Gso16g1780 779 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 18 46 IPR014014 GO:0003724
Gso16g1780 779 Pfam DBP10CT (NUC160) domain 627 688 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gso16g1780 779 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 49 222 IPR014001 -
Gso16g1780 779 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 88 374 IPR027417 -
Gso16g1780 779 MobiDBLite consensus disorder prediction 761 779 - -
Gso16g1780 779 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 246 395 IPR001650 -
Gso16g1780 779 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 5 776 - -
Gso16g1780 779 Pfam DEAD/DEAH box helicase 42 209 IPR011545 GO:0003676|GO:0005524
Gso16g1780 779 MobiDBLite consensus disorder prediction 695 727 - -
Gso16g1780 779 SMART DBP10CT_2 627 689 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Gso16g1780 779 MobiDBLite consensus disorder prediction 694 779 - -
Gso16g1780 779 MobiDBLite consensus disorder prediction 731 755 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1780 Gso-Chr16 38361074 38367110 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1780 1 389 Eukaryotic Initiation Factors Gene Family AT1G72730 31.202 1.63e-58 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1780 K14808 - gmx:100817417 1483.39