Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1766 ATGGCTTCTCTGCTCCTCCCTCCAACTCCAACAGCTACTTCTTCCACAGTTAAACACAACAAAATCAAAATGAAACTGAAACCAAACAGCAATGCTCATGCAGCTACATGTAATTTCTTCTTATCATCGAATTCAAACGCAAACCACCGTTTCAACTCTGCAAAGTGCCATGCATTGTTGGATGACGTGGCCAAAGGGTTGTTGGAGAGCAGCAGCAGCGTTGGCGTGGACCAGTTCCAGAGACTGACCGAAGGCTTATCCCACATGCAGAGGTGGGAGATCCTCGTGTTTGGAGGCTTGACGTGGATTTACCTGACTGCAAGACCAGGTGTTCTTGTTGGTGCCATTGATGCGTACCTTTTGGCACCTCTTCAACTGGGTTTGGACAACTTGTCTGGAAGGAGGAACTTGAAGAGGAGTGACTTTGTTGTTGGAGACAAGCTCGGTGAAGGGTCCTTTGGTGTTGTCTATTCGGGTATTTTGGTCCCAAAGAATGTGGATCTGGATGTGGTGCAGAAGAGGGGGAGAGGCAAGACAACACAGGTGGATGCCAAGTCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCTGAGGAGTTTGGTGATTATGAGGAGTGGTTCAATTACAGGCTATCTAGGGCAGCACCCGAAACATGTGCTGACTTCCTTGGAACTTTTGTAGCTGATCAAACTAATTCACAGTTTACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGATCGTACTCTTGCAGATTACATGAAAGATCGCAACTTTCCTTCAAACTTGGAATCTGTGATGTTTGGACGTGTCTTGCAAGGAGTAGACTCTTCGAAACGAAATGCATTGATCATCAAACAAATAATGCGCCAGATCATTACATCTCTTAGGAAAATTCACGATACAGGCATTGTTCATAGGGATGTAAAGCCAGCCAACTTAGTGGTTACTAAACGAGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTACGTTCCCAATCGTACCCTTTTGGATCCTGACTACTGCCCCCCAGAATTATATGTACTCCCTGAAGAAACACCAAGTCCACCACCAGAGCCAATTGCTGCTTTCCTTTCACCAATCCTGTGGCAGTTAAACAGCCCTGATTTGTTTGATATGTATTCAGCTGGGATTGTACTCCTGCAAATGGCAATACCAAGCTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAACTTGGAACTGAAAACCTGTGGATATGATTTGAAAAAATGGAGGGACTATACTCGCCTCCGGCCTGACTTCCAAATTCTAGATAGTGAATCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTGTATCTGAGAGAGGTTCCCTAAGAAGAGGACGTTTATCTGCCGCTGCTGCTCTGCGACATCCTTATTTTCTTCTGGGTGGTGATCAAGCAGCTGCAGTCCTTTCAAAATTAAGCTTGAACAGAAAGTGA 1512 0.4491 MASLLLPPTPTATSSTVKHNKIKMKLKPNSNAHAATCNFFLSSNSNANHRFNSAKCHALLDDVAKGLLESSSSVGVDQFQRLTEGLSHMQRWEILVFGGLTWIYLTARPGVLVGAIDAYLLAPLQLGLDNLSGRRNLKRSDFVVGDKLGEGSFGVVYSGILVPKNVDLDVVQKRGRGKTTQVDAKSKDKVILKKVKVGIQGAEEFGDYEEWFNYRLSRAAPETCADFLGTFVADQTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLRKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRTLLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLELKTCGYDLKKWRDYTRLRPDFQILDSESGRGWDLATKLVSERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLNRK* 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1766 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 311 323 IPR008271 GO:0004672|GO:0006468
Gso16g1766 503 Pfam Protein kinase domain 291 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1766 503 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC 1 501 - -
Gso16g1766 503 CDD STKc_SNT7_plant 146 484 - -
Gso16g1766 503 Gene3D Phosphorylase Kinase; domain 1 129 251 - -
Gso16g1766 503 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 1 501 IPR044803 GO:0004674|GO:0009579
Gso16g1766 503 SUPERFAMILY Protein kinase-like (PK-like) 138 485 IPR011009 -
Gso16g1766 503 ProSiteProfiles Protein kinase domain profile. 142 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1766 503 Gene3D Transferase(Phosphotransferase) domain 1 282 486 - -
Gso16g1766 503 SMART serkin_6 142 484 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1766 Gso-Chr16 38260384 38265270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1766 142 340 MAP Kinase Kinase Kinase AT3G13530 24.752 1.99e-10 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Gso16g1766 Pkinase 5.8e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1766 - - gmx:100788727 947.962