Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1757 ATGGCAGACACAAATTCAGTTGAAGTGATTTTGGATTTTCTGAAGAGGAATCGGTTCACACGAGCTGAGGCGGCTTTGCGTAGTGAGCTCAGTAACTGTTCTGATTTGAATGGTTTCTTGCAGAAGCTTACATTGGATGAAAAGAACTTGCATGATGGGTTGCAGAATGATAAGGGGAAGCCTGTGGTAGAAAATCAAGGGTTGGATTCTCGTGACAGTGTTGAAGTTTCTAAAGAACTGATTGTGAAGGAAATAGAGTGTGGGACTGGTACTAGTAATGCTGCTGAAAGCAAATGGAAAATTGTTGCTCCTACTGGCGAAAGGAATAAGTCTAATGAAGTGGTTGGGACGAGTGACAAAAACTTCACTTTCTCCAAGAGTTCGGAGGACAGTGTTCTTGATATGTACTCATGGAAGTTTAATGCCAGCAATGGTCCTGTGGAGCTTTACCAAAATGATGGTGGAAGTAGGCCTAATAATGCTTTAAAGGCCCCGGTATCTCAGCAATCAAAGTATCAAACTAGTGAAGCTCTTGATGCAACCAACAGTAATGTGAAATCTAAGGAGGAAAATAATGTGCCTGCGGAAAAAACTTCCTTGTGGATTGGAAGTAGTGGTAAAGCCTCTACGGAACCAAAGTATGACCTTATGCAGAGCAAAGAACCTAGGGAACTTGATCGGCAGTTTAAATTTAATGCTTCATCTCTTAAAGAGAACTTGACAGATAATGTCTTGTCAAGAACTGATGAGAATGTGAATTCATCTACAGACCCATGGAAAGATTGTTCTGTCAAGACTGTTTTCCCTTTCTCAAAGGGGGATATGTCTACAAGCTACAACGGTTCAACTTATTCTGACAGAAAAGAGGAAAAGAGAAGGGCAGAAAACAGTGATGTTAGGGCATCAATAAAAGAGCAAGTGGACGAAGTGGGAAGAGCTCTTTACCTAGGGAAGTTGCAAGGCAGTTCTGACAGCTTAAGTTTTCCTCTTGCACCAGAAAATCAGAAGGAAGAGTTTCCTAGGCTTCCTCCTGTAAAAATCAAGTCAGAAGATAAGCCCTTGACTTTTAATTGGGGGGAGAAGTTTGAGTGTGATGGACTTTCTGTGAAACTCGCTGGTGCTGACAACACCTTACTTATTGGGTCATATCTGGATGTCCCTATTGGACAAGAAATTAAAACTACAGGTGTGAGGAAGGCTGTAGGGGGCAGTTGGCTGTCTGTAAGTCAAGGGATTGCAGAGGATACATCTGATCTTGTATCAGGTTTTGCAACAATTGGGGATGGATTGAGTGAATCTGTTGATTATCCAAATGAATATTGGGACTCTGACGAATATGATGATGATGAAGATGTTGGGTACACGAGACAACCTATTGAGGATGAGGCCTGGTTTTTGGCACATGAAATAGATTACCCTAGTGACAATGAAAAGGGGACTGGGCATGGAAGTGTTCCAGATCCGCAGGAAAGAGGTCCAGCCAAAGATGAGGAGGATGATCAATCTTTTGCTGAGGAGGATTCTTACTTCTCTGGTGAGCAATATATTCTACCAAAAAATGTTGAGCCGGTCACTGCTTCAGATGATCCTATTGGTCTAACGGTCACTGAAATGTATGGAAGAACTAATGGTGATGATGTAATGGCTCAATTTGATAGACAATTGATGGATGTTGAAGAACTGAATCTGATGCATATGGAACCTGTCAGGCAGGGCTTTGTCACTCACAAAAATGATCTCATCATGCTAGGAGATGGGAAGGTTCTGAATCATAGTGCGAGGTCACGAATTGAGGACATGGAAGATGATCAGCATGGTTCAGTTAGATCAATAGGGGTGGGTATCAACAGCGATGCTGCTGATATTGGCAGTGAAGTGCATGGAAGTTTGGTTGGTGGTAGTAGTGAGGGGGATTTAGAATATTTCCGTGATCATGATACTACTACACACAGTGGCTCCAAACACTCTCATCATGATTTGGATAAGAATTCTATTAACAAATCATTCAAAAATAATAAGAAAAAGGACAATACTGAGTCAAATAAATATGTCATTGACAGTGATAAAGATGCATGCTCACAGATAAAAACACACACTGATGGGAACTTCTCATTTCCTCAATCTCTTAGAGATAGCCAGATGATTCATGCTGGCTCCAGTAAGACCCTATGGTCGAGTAATTGTAATGTAGAAGCAGATGACTGTATGAATGCATTTGTGGGATCTGATGACATGCTTTCTTCTTGGAAGAGGAAGAGTAGTGATTCTTCACCTGTTAAAAGTTCTAGGGATGAGAATAATGCTATTGTGGTAAGATCCAGAAACTCTTCTCCAACTACAGTCTCGAATTATGGGTATACTGATGGAGAGCTTGTCAAACTAGAAAAGGATGAAAAGGTTAGCATTGTAAGGGAAGATGATATAGGTGCATCACTGGAGGATGAAGAGGCAGCTGCTGTGCAAGAGCAGGTAATGCAAATAAAGGCTCAAGAGGAGGAATTTGAAACCTTCAATCTAAAGATTGTGCACAGGAAAAACAGAACTGGCTTTGAGGAGGACAAGAATTTCCATGTTGTTTTAAATTCTGTACTAGCTGGGCGCTATCATGTCACCGAGTATCTGGGATCAGCTGCATTTAGCAAAGCTATACAAGCTCACGACCTGCACACAGGCATGGATGTTTGTGTTAAAATTATAAAGAACAACAAAGACTTCTTTGACCAAAGCCTTGATGAGATCAAGCTTCTTAAGTATGTCAATAAGCATGATCCTTCAGACAAGTACCACCTTCTAAGATTGTATGATTACTTTTATTATAGAGAACATTTGTTAATAGTATGTGAACTACTTAAAGCCAATTTATATGAGTTTCACAAATTTAATCGAGAATCAGGGGGGGAAGTGTATTTCACGATGCCAAGATTGCAGTCAATTACCATTCAGTGTTTGGAAGCACTTCAGTTTTTGCACAGTCTTGGACTAATACATTGTGACTTGAAGCCAGAGAATATTTTGGTTAAAAGCTATAGCAGATGTGAGGTTAAAGTCATTGATCTCGGAAGTAGCTGTTTTGAGACAGATCACCTTTGCTCGTATGTTCAGTCCAGGTCCTATCGCGCTCCTGAGGTTATTTTGGGGCTTCCATATGACAAGAAGATTGATATCTGGTCACTTGGATGCATCTTGGCAGAACTTTGTACTGGCAATGTCCTCTTCCAAAATGATTCCCCGGCAACATTACTTGCTCGGGTGATTGGTATAATTGGCCCAATTGATCAAGGTTTGCTTGCTAAAGCACGGGATACATACAAGTACTTCACAAAAAATCATATGCTTTATGAACGAAATCAGGAAAGCAACAGGTTAGAATACCTGATTCCTAAAAAGACATCATTAAGGCATAGATTACCGATGGGGGACCAAGGCTTCATCGACTTTGTTGCTCATTTGCTCGAGGTTAACCCGAAGAAGCGACCTTCTGCATCCGAAGCACTGAAGCACCCATGGTTATCATACCCTTATGAACCAATATCATCTTGA 3540 0.4099 MADTNSVEVILDFLKRNRFTRAEAALRSELSNCSDLNGFLQKLTLDEKNLHDGLQNDKGKPVVENQGLDSRDSVEVSKELIVKEIECGTGTSNAAESKWKIVAPTGERNKSNEVVGTSDKNFTFSKSSEDSVLDMYSWKFNASNGPVELYQNDGGSRPNNALKAPVSQQSKYQTSEALDATNSNVKSKEENNVPAEKTSLWIGSSGKASTEPKYDLMQSKEPRELDRQFKFNASSLKENLTDNVLSRTDENVNSSTDPWKDCSVKTVFPFSKGDMSTSYNGSTYSDRKEEKRRAENSDVRASIKEQVDEVGRALYLGKLQGSSDSLSFPLAPENQKEEFPRLPPVKIKSEDKPLTFNWGEKFECDGLSVKLAGADNTLLIGSYLDVPIGQEIKTTGVRKAVGGSWLSVSQGIAEDTSDLVSGFATIGDGLSESVDYPNEYWDSDEYDDDEDVGYTRQPIEDEAWFLAHEIDYPSDNEKGTGHGSVPDPQERGPAKDEEDDQSFAEEDSYFSGEQYILPKNVEPVTASDDPIGLTVTEMYGRTNGDDVMAQFDRQLMDVEELNLMHMEPVRQGFVTHKNDLIMLGDGKVLNHSARSRIEDMEDDQHGSVRSIGVGINSDAADIGSEVHGSLVGGSSEGDLEYFRDHDTTTHSGSKHSHHDLDKNSINKSFKNNKKKDNTESNKYVIDSDKDACSQIKTHTDGNFSFPQSLRDSQMIHAGSSKTLWSSNCNVEADDCMNAFVGSDDMLSSWKRKSSDSSPVKSSRDENNAIVVRSRNSSPTTVSNYGYTDGELVKLEKDEKVSIVREDDIGASLEDEEAAAVQEQVMQIKAQEEEFETFNLKIVHRKNRTGFEEDKNFHVVLNSVLAGRYHVTEYLGSAAFSKAIQAHDLHTGMDVCVKIIKNNKDFFDQSLDEIKLLKYVNKHDPSDKYHLLRLYDYFYYREHLLIVCELLKANLYEFHKFNRESGGEVYFTMPRLQSITIQCLEALQFLHSLGLIHCDLKPENILVKSYSRCEVKVIDLGSSCFETDHLCSYVQSRSYRAPEVILGLPYDKKIDIWSLGCILAELCTGNVLFQNDSPATLLARVIGIIGPIDQGLLAKARDTYKYFTKNHMLYERNQESNRLEYLIPKKTSLRHRLPMGDQGFIDFVAHLLEVNPKKRPSASEALKHPWLSYPYEPISS* 1180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1757 1179 ProSiteProfiles Protein kinase domain profile. 868 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1757 1179 MobiDBLite consensus disorder prediction 638 682 - -
Gso16g1757 1179 Gene3D Phosphorylase Kinase; domain 1 862 949 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 472 505 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 637 682 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 278 300 - -
Gso16g1757 1179 CDD PKc_DYRK_like 868 1170 - -
Gso16g1757 1179 ProSitePatterns Serine/Threonine protein kinases active-site signature. 994 1006 IPR008271 GO:0004672|GO:0006468
Gso16g1757 1179 SMART serkin_6 868 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1757 1179 Pfam Protein kinase domain 868 1170 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gso16g1757 1179 SUPERFAMILY Protein kinase-like (PK-like) 857 1172 IPR011009 -
Gso16g1757 1179 Gene3D Transferase(Phosphotransferase) domain 1 922 1170 - -
Gso16g1757 1179 PANTHER - 2 1177 - -
Gso16g1757 1179 PANTHER DUAL SPECIFICITY PROTEIN KINASE 2 1177 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 284 300 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 151 194 - -
Gso16g1757 1179 MobiDBLite consensus disorder prediction 151 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1757 Gso-Chr16 38167204 38175965 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1757 867 1165 MAP Kinase Gene Family AT5G19010 30.284 1.62e-29 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_DYRK-PRP4 Gso16g1757 Pkinase 1.1e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1757 - - gmx:100786225 2318.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1757 16 38167204 38175965 Gso16g1757 16 38167204 38175965 ECH
Gso16g1757 16 38167204 38175965 Gso9g1396 9 37906497 37915285 GST
Gso5g2119 5 44106060 44117812 Gso16g1757 16 38167204 38175965 PCT
Gso8g0480 8 4411503 4422155 Gso16g1757 16 38167204 38175965 PCT
Gso16g1757 16 38167204 38175965 Gso5g2119 5 44106060 44117812 PCT
Gso16g1757 16 38167204 38175965 Gso8g0480 8 4411503 4422155 PCT