Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1755 ATGTGCAGTAGAGGCCATTGGAGGCCAGCTGAGGATGAGAAACTTCGAGAATTGGTGGAACACTATGGACCTCATAATTGGAACGCCATAGCCGAGAAGCTCCGAGGAAGATCAGGGAAAAGCTGTAGGTTGAGATGGTTCAATCAATTGGACCCAAGAATAAACAGAAATCCTTTCACAGAGGAAGAAGAAGAGCGTCTTCTAGCTTCACACCGGATTCATGGTAATAGATGGGCTGTAATTGCAAGACACTTCCCAGGTCGAACTGATAACGCAGTAAAGAATCATTGGCATGTGATGATGGCAAGGATTCGGAGAGAAAGGTCTAAAATTAATAATCCAAAACTGCAGCCACTTTTTGCTCCAAACTTGAAGGATGACCTTGAGGCCATCCCTTCTTTTGTTGAGAAGTATTATGAAAAGTACAGCCACCCTTGTGTCACACTCACACATAGCTCTTTTCAATTTCCCGGCAAGAAGTTTTACTTTCAAGATCCAAGTTCTGCTGGTTCCACTGTGCCTCCAGGCAAGAGTCAATCAGTAGAGTTCTACGATTTTCTTCAAGTAAATACCGATTCCAATGAAAGTGAAGTGACAGACAATGCAAGAAGAGACGACGAGGAAGTAAGTCAAGATGCTGTGGGACAGAAGAATAAGGACAATGGTGTTCCATTCATTGATTTTTTGTCTACTGGAGGCTGCTAA 705 0.4326 MCSRGHWRPAEDEKLRELVEHYGPHNWNAIAEKLRGRSGKSCRLRWFNQLDPRINRNPFTEEEEERLLASHRIHGNRWAVIARHFPGRTDNAVKNHWHVMMARIRRERSKINNPKLQPLFAPNLKDDLEAIPSFVEKYYEKYSHPCVTLTHSSFQFPGKKFYFQDPSSAGSTVPPGKSQSVEFYDFLQVNTDSNESEVTDNARRDDEEVSQDAVGQKNKDNGVPFIDFLSTGGC* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1755 234 PANTHER TRANSCRIPTION FACTOR MYB54 1 231 - -
Gso16g1755 234 Gene3D - 4 55 - -
Gso16g1755 234 PANTHER MYB PROTEIN-RELATED 1 231 - -
Gso16g1755 234 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Gso16g1755 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 54 IPR017930 -
Gso16g1755 234 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gso16g1755 234 CDD SANT 7 48 IPR001005 -
Gso16g1755 234 MobiDBLite consensus disorder prediction 193 220 - -
Gso16g1755 234 MobiDBLite consensus disorder prediction 197 214 - -
Gso16g1755 234 SMART sant 55 103 IPR001005 -
Gso16g1755 234 SMART sant 3 52 IPR001005 -
Gso16g1755 234 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 55 105 IPR017930 -
Gso16g1755 234 CDD SANT 58 101 IPR001005 -
Gso16g1755 234 Pfam Myb-like DNA-binding domain 7 67 - -
Gso16g1755 234 SUPERFAMILY Homeodomain-like 4 97 IPR009057 -
Gso16g1755 234 Gene3D - 57 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1755 Gso-Chr16 38151567 38154554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1755 1 232 MYB Transcription Factor Family AT1G17950 57.143 1.98e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Gso16g1755 Myb_DNA-bind_6 7.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1755 K09422 - gmx:100785170 496.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1755 16 38151567 38154554 Gso9g1394 9 37882474 37886135 GST