Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1751 ATGGTTCTCACATCCACTGCCACACACCCAGATGAACAAGACCAGAGCCTAAACTATACTTTTGCTTCCAGATATGTGCGTGAACCTATTCCAAAGTTCAAGATGCCGGAGAAATCCATACCAAAAGATGCTGCTTATCAGATAATAAACGATGAGTTGATGTTGGATGGTGCACCAAGGCTCAACTTGGCCTCGTTTGTGACCACTTGGATGGAGCCTGAGTGTGACAAGCTCATAATGGCTTCACTTAACAAGAACTACGTTGACATGGATGAGTATCCTGTCACCACTGAGCTCCAGAACCGGTGTGTTAATATCATAGCAAATCTATTCCATGCTCCTATAAGTGATGATGAGACTGCAGTAGGTGTGGGAACTGTGGGGTCATCGGAGGCAATAATGTTGGCAGGTCTAGCTTTTAAAAGGAAATGGCAGACAAAGAGAAAAGCAGAAGGCAAACCATATGATAAGCCCAACATAGTAACTGGGGCTAATGTGCAGGTTTGTTGGGAAAAATTTGCAAGGTACTTTGAGGTAGAGCTCAAGGAAGTGAAACTCAAAGAAGGATACTATGTGATGGACCCTGCGAAAGCAGTTGAAATGGTAGATGAGAACACCATCTGTGTTGCAGCCATTTTGGGGTCAACTATGACCGGAGAGTTTGAGGATGTGAAGCTTCTCGATGAACTTCTTACTAAAAAGAACAATGAGACAGGTTGGGATACCCCAATTCATGTAGATGCTGCCAGTGGGGGGTTTATTGCCCCATTTCTATATCCTGATTTAGAGTGGGACTTCCGTTTGCCGTTGGTGAAAAGCATCAATGTTAGTGGTCACAAGTATGGTCTTGTCTACCCTGGTGTTGGTTGGGTTGTATGGAGGAGCAAAGATGACTTGCCAGATGAACTTGTTTTTCACATAAATTATCTTGGATCTGATCAGCCCACTTTCACATTGAATTTCTCCAAAGGATCTAGTCAAATTATTGCTCAATATTATCAATTGATTCGGCTTGGCTTTGAGGGTTACAAAAATATCATGGAAAATTGCTGGGAGAATGCAAGAGTTCTGAAGGAAGGAATCGAGAGAACAGGTCGGTTTAACATCATCTCCAAGGATATCGGTGTGCCACTTGTAGCCTTCTCCTTGAAAGACAGTAGTCAACACACAGTGTTTGAGATAGCAGACCATCTGAGAAAATTCGGGTGGATAGTTCCTGCCTATACAATGCCACCAGATGCTCAACACATTGCTGTCCTTCGGGTGGTGATCAGGGAGGATTTCAGCCGCGGCTTGGCCGAGAGACTCGCCGCTGACATAGAGAAAGTTGTGAAGCTCTTGGACACACTTCCTAGCCCCCTCACTACCAAAGCTGTTCATATCACAGCTATCACTAGTGAGACTGGTGAGAAGATTAAGAAAGCTGCAATAGAGACTCAGAAAGAGATTGCTTTCTACTGGAAGCGACTTGTGGATGGCAAGAGACTTGGAGCATGCTAG 1500 0.444 MVLTSTATHPDEQDQSLNYTFASRYVREPIPKFKMPEKSIPKDAAYQIINDELMLDGAPRLNLASFVTTWMEPECDKLIMASLNKNYVDMDEYPVTTELQNRCVNIIANLFHAPISDDETAVGVGTVGSSEAIMLAGLAFKRKWQTKRKAEGKPYDKPNIVTGANVQVCWEKFARYFEVELKEVKLKEGYYVMDPAKAVEMVDENTICVAAILGSTMTGEFEDVKLLDELLTKKNNETGWDTPIHVDAASGGFIAPFLYPDLEWDFRLPLVKSINVSGHKYGLVYPGVGWVVWRSKDDLPDELVFHINYLGSDQPTFTLNFSKGSSQIIAQYYQLIRLGFEGYKNIMENCWENARVLKEGIERTGRFNIISKDIGVPLVAFSLKDSSQHTVFEIADHLRKFGWIVPAYTMPPDAQHIAVLRVVIREDFSRGLAERLAADIEKVVKLLDTLPSPLTTKAVHITAITSETGEKIKKAAIETQKEIAFYWKRLVDGKRLGAC* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1751 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gso16g1751 499 SUPERFAMILY PLP-dependent transferases 11 446 IPR015424 -
Gso16g1751 499 Pfam Pyridoxal-dependent decarboxylase conserved domain 36 384 IPR002129 GO:0016830|GO:0019752|GO:0030170
Gso16g1751 499 Gene3D - 69 363 IPR015421 GO:0003824
Gso16g1751 499 TIGRFAM Glu-decarb-GAD: glutamate decarboxylase 20 447 IPR010107 GO:0004351|GO:0006536|GO:0030170
Gso16g1751 499 PANTHER GLUTAMATE DECARBOXYLASE 1 499 - -
Gso16g1751 499 Gene3D - 1 68 - -
Gso16g1751 499 Gene3D - 364 451 - -
Gso16g1751 499 CDD DOPA_deC_like 62 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1751 Gso-Chr16 38120189 38124558 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1751 1 499 Calmodulin-binding Proteins AT3G17760 78.088 0.0 809
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1751 K01580 - gmx:100783047 1004.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1751 16 38120189 38124558 Gso9g1392 9 37855579 37860156 GST