Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1749 ATGGCTAATTTTGAGAAAGATGAGGTGCCAATTTTCTCAGAAGTTCATCCCAAACCATCAAATGAACCTGTTGATACTAAATTCCCAAGGGGGGTACCTAGGACTCGAAGTGTATCAATTTCTATTCCCTCGACACTCACGGAGCCATACGAAAGAGGTAATAATCTTGTGGGATACACTGGTCCCCTAAGGAGTCAGAGGAAAACACCATTTGATCATATGAGTGGTCCATTGTATGTTACTAATAAACATGGAAACCTTTTCCGGCATAATAGAGTAGCATCAGAGTACCAAACAGCAGAAAGTAAGACAGAAAATTTTCCTTCATGCTGCGGCATGGGAGAAAATGATTTGCAGAACAACTATGCTGGCAAGAATGAACATTTAGTTAGGTCCGGTCCACTGGGAATGTGTAATGATCCATATTGTACAACTTGCCCAACTTACTTCAAGGCTACTCAACAAATGAATTCAAAAGCTTCGGGTATATTCAATCCTGAGTTTCGCAATACCCTCTATGGGGATGCCAGGGATTGGGCAAGAAGACTTTTTGCTTTCTTGATTCCACTTGTTCCTAGAGTTATGAATCCTCATAATAGACTTGTACAACAATGGAATAAATTTTTTGCAATTTGTTGCTTGGTGGCAATATTTGTGGATCCGTTATTTTTCTTCTTGCTCTCTGTGCAGAAGGAACATAAATGTATTGTTATACACTGGACTATGGCAAAAATGCTTGTTGTACTTAGAAGCATGAATGATTTCATACACTTCCTAAACATTGTTCTTCAGTTTAGGTTGGCTTATGTGGCTCCTGAGTCTAGGGTGGTTGGTGCCGGGGAGTTAGTTGACCATCCTAAGAAAATAGCTCTTCACTACCTTCGAACATCTTTTATTATTGACTTATTTGTTGTACTTCCACTTCCTCAGATATTCATATTGTTTGTCCTACCAAAACACTTGGGGTCATCAGGAGCAAACTATTCGAAGAATATTTTGCGTATCGTGATCCTTGTTCAGAATATTCCCAGATTGTGTTGGTTTCTTCCTATGCTAATTTCTCCAACAGGATCTATATTTGAGTCACCATGGGCAAGTTTCTTTATAAATCTTTTTACCTTTATGCTATCTGGCCATGTTGTTGGGTCGTGGTGGTACCTCTTTGGTTTGCAGAGGGTTAATCTGTGCCTACGAGTTGTCTGCAAGAAACAATTCAAAGCATATATTGATGAATGCGCAAAATTCATTGATTGTGGGCATGGTCAAGCTGAAGCAAATCAAAATAACGCAATCATGCTTAATTGGAGGAACAGTTCTGTTGCAAGTGTATGTTTTACTGAAGATGGTTTTCCATATGGGATCTATAATAAAGCTGTCAACCTTACTGCGGATCATAATGTGATCACTAGATATGTATATTCATCATTTTGGGGATTCCAGCAAATTAGTACTCTGGCTAGCAATTTAACCCCCAGCTATTTTGTTTGGGAAGTCATTTTTACCATGATCATCATAGGATCGGGACTGTTGCTGTTTGCTCTTCTCATTGGAAACATACAAAACTTTCTTCAGGCTCTTGAACGCAGGAGACTAGAAATGACACTTAGACGACGTGATGTTGAGCAATGGATGAGCCATCGGCACTTAGCAGAAGATCTGAGAAGGAAAGTGCGACAAGCTGAACGTTATAACTGGGCCGCAACAAGAGGTGTGAATGAAGAAATGCTCCTTGAGAATTTGCCAGAAGACCTCCAAAGGGACATCAGACGTCATCTCTTTACATTTATTAAGAAAGTTCGAATTTTTGCTTTGTTGGATGAGCCTATCTTGGATGCCATATGTGAGAGGCTAAGACAAAAAACATATATCAAAGGAAGCAAAATTTTGTATGATGGCGGTTTGGTAGAGAAGATGGTTTTTATTGTGCGTGGAAAATTGGAGAGTGTTGGCGAAGATGGAATTAGTGCTCCCCTTTATGAAGGGAGTGTTTGTGGTGAAGAACTTCTGACATGGTGTCTTGAGCATCCTTTAGCAAGCAAAGGTTGTGGAAAAGCAAGGATTCCAAAGCAAAAGTTGGTTAGTAACCGGACAGTATGTTGCTTAACGAATGTGGAGGCATTTGCCCTTAGAGCAGCAGACCTTGAAGAAGTTACAAGCATTTTTGCAAGATTCTTTCGGAGTCCCCGTGTTCAAGGAGCCATAAGGTATGGATCACCTTACTGGAGATGCTTTGCAGCAACAACCATCCAGGTTGCATGGAGATACAGGATGAAATGTCTTAGTCGTGCTGACACTACTCGATCAAATGAAACATCAAACATTTACAATTCACTGTAA 2337 0.4014 MANFEKDEVPIFSEVHPKPSNEPVDTKFPRGVPRTRSVSISIPSTLTEPYERGNNLVGYTGPLRSQRKTPFDHMSGPLYVTNKHGNLFRHNRVASEYQTAESKTENFPSCCGMGENDLQNNYAGKNEHLVRSGPLGMCNDPYCTTCPTYFKATQQMNSKASGIFNPEFRNTLYGDARDWARRLFAFLIPLVPRVMNPHNRLVQQWNKFFAICCLVAIFVDPLFFFLLSVQKEHKCIVIHWTMAKMLVVLRSMNDFIHFLNIVLQFRLAYVAPESRVVGAGELVDHPKKIALHYLRTSFIIDLFVVLPLPQIFILFVLPKHLGSSGANYSKNILRIVILVQNIPRLCWFLPMLISPTGSIFESPWASFFINLFTFMLSGHVVGSWWYLFGLQRVNLCLRVVCKKQFKAYIDECAKFIDCGHGQAEANQNNAIMLNWRNSSVASVCFTEDGFPYGIYNKAVNLTADHNVITRYVYSSFWGFQQISTLASNLTPSYFVWEVIFTMIIIGSGLLLFALLIGNIQNFLQALERRRLEMTLRRRDVEQWMSHRHLAEDLRRKVRQAERYNWAATRGVNEEMLLENLPEDLQRDIRRHLFTFIKKVRIFALLDEPILDAICERLRQKTYIKGSKILYDGGLVEKMVFIVRGKLESVGEDGISAPLYEGSVCGEELLTWCLEHPLASKGCGKARIPKQKLVSNRTVCCLTNVEAFALRAADLEEVTSIFARFFRSPRVQGAIRYGSPYWRCFAATTIQVAWRYRMKCLSRADTTRSNETSNIYNSL* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1749 778 Gene3D Jelly Rolls 599 723 IPR014710 -
Gso16g1749 778 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 20, CHLOROPLASTIC-RELATED 6 765 - -
Gso16g1749 778 ProSiteProfiles cAMP/cGMP binding motif profile. 601 679 IPR000595 -
Gso16g1749 778 Pfam Ion transport protein 205 529 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso16g1749 778 CDD CAP_ED 601 717 IPR000595 -
Gso16g1749 778 MobiDBLite consensus disorder prediction 1 33 - -
Gso16g1749 778 SUPERFAMILY Voltage-gated potassium channels 197 529 - -
Gso16g1749 778 Gene3D Helix hairpin bin 527 593 - -
Gso16g1749 778 Gene3D - 206 526 - -
Gso16g1749 778 SUPERFAMILY cAMP-binding domain-like 529 724 IPR018490 -
Gso16g1749 778 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 765 - -
Gso16g1749 778 SMART cnmp_10 601 736 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1749 Gso-Chr16 38100953 38113541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1749 5 681 Ion Channels AT3G17700 58.858 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1749 K05391 - gmx:100782506 1590.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1749 16 38100953 38113541 Gso9g1391 9 37835471 37848798 GST