Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1748 ATGGCTAATTTAGAAAATGACAAGCTGCCGATGCTGTCAGATATAGATGCACAACCATATGATGAACCCTTGGACTCTAAATTCAAAAGGACAGTAACCAGGACACAAAGCGCATCAGTTTCTATTTCTATGAGTTCCTTGGAGTCATATGAGAAAGAAACTAGCCTTGTAGGACATACTGGTCCACTTCAGAGCAAGAGGAAAACACCCTTTATGCAGATGAGTGGTCCATTGTATGCTACCACTGGAACTGGAAATCTTCTGCAGAAGCATATTGTATCAGGAAACAAAGCAAAGGAAAGAACAACAGATAATTTTGCTACACACCATGACACAGGTTCAAATTACTGGAATAACGACTATGATAGAAAAAATGAACACTTACTAAAGTCTGGGCAACTGGGAATGTGCAATGATCCTTATTGTACTACTTGCCCTACTTACTTCAACGCTTCTCAGCAGAGAAATCCAAAACCTTCAACTAGATGGGATCCAAAGTTCCATAATGCTCTTTATGGGGATGCCAAGAGTTTTGTCAGAAAACTTCTTTCTTTCTGCTATTCGTATGTTCCTGGAGTTATGAACCCTCATGCTAAAGTTGTACAAAAATGGAACAAATGTTTGGCCATTTTTTGCTTGATTGCTATTTTTGTGGACCCACTATTTTTCTTCTTACTCTATGTGGAGAAGGATAATAAATGTATTGTTATCAACTGGCCTTTGACAACAGCACTTGTTTTATTTAGATGCGTGAATGATTTTGTTTATTTCCTTAACATTCTTCTCCAGTTTAGGTTAGCTTATGTTTCTCGTGAATCGAGGGTGGTTGGTGCTGGAGATTTGGTTGACCATCCAAAGAAGATTGCTCTTCATTACCTAAAGGGTTATTTCCTTATTGACTTATTTGTTGTATTTCCTCTTCCTCAGATAATGATATTGTTTGTCCTACCAAATTCCTTGGAGGGAGCAAATTATGCCAAGAATCTTCTGCGTGCAGCGATCTTAGTGCAATATATCCCCAAGTTGTTCAGGTTTCTGCCACTGCTAATTGGCCAATCTCCAATGGGATTCATATTTGAGTCAGCCTGGGCAAATTTCGTCATAAACCTTCTCATTTTTGTGCTTGCTAGTCATGTTGTTGGCTCTTGCTGGTACCTCTTCGGTCTTCAGAGGGTTAATCAGTGTTTGCGGGATGCCTGCCATAGTTCTAATATACCTGAATGCATGAAGTTCATTGATTGTGGACGTGGCCATGGAAACAATCAGCCTGGCTTAAGATCAGATCAGTGGATCAACAATACCCAAGCTGTCGCTTGTTTGGATCCCTCTCCTGATGGTTTCTCTTACGGAATTTATGAGAATGCTGTACCACTTACTATAGAAACTAATGTTGTCAAGAAATACGTGTATTCTCTTTTTTGGGGATTCCAGCAAATCAGTACTCTAGCTGGTAATCTAGAACCTAGCTATTTTGTGTGGGAAGTCCTTTTTACTATGGCCATCATAGGAATGGGACTCTTGCTTTTTGCAATTCTTATTGGAAACATACAGAACTTTCTGCAGGCTCTTGGACGGAGGAAGCTGGAAATGCAACTTAGAGGCCGGGATGTTGAGCAATGGATGAGCCATCGGCGCTTACCAGAAGATCTAAGAAGGAGAGTAAGACGGGCTGAACGATACAATTGGGCTGCAACAAGGGGGGTGAATGAAGAAATGCTTATGGAGAATTTGCCAGAAGATCTCCAGAGAGACATAAGACGTCATCTCTTCAAATTTGTTAAGAAAATTCGGCTTTTTGCTCTGATGGATGAACCTATCTTAGATGCCATTTGTGAGAGACTAAGACAAAAGACATACATCAAAGGAAGTAAAATTCTAAGTCAGGGTGGTCTAGTAGAGAAGATGGTATTCGTGGTGCGTGGCAAATTGGAAAGCATTGGAGAAGATGGAACTAGAATTCCTCTATCTGAAGGGGATTCTTGTGGTGAAGAGCTTCTGACATGGTATCTTGAACATTCTTCAGTTAGCACAGATGGTAGAAAAGTAAGACTTCCAGGACAGAGATTGGTTAGCAACAGGACAGTAAGGTGCTTAACAAATGTGGAGTCATTTTCACTCTCTGCTTCAGACATTGAAGAAGTTACAATCCTTTTCACAAGATTCTTGCGGAGTCCATGCGTTCAAGGAGCCCTAAGGTACGAGTCACCTTATTGGAGATCCCTTGCTGCGACCCGCATTCAAGTTGCTTGGAGATACAGGAAGAAACGTCTAAGTCGTGTTAATTCCTCACCGTCAGATTAA 2301 0.4085 MANLENDKLPMLSDIDAQPYDEPLDSKFKRTVTRTQSASVSISMSSLESYEKETSLVGHTGPLQSKRKTPFMQMSGPLYATTGTGNLLQKHIVSGNKAKERTTDNFATHHDTGSNYWNNDYDRKNEHLLKSGQLGMCNDPYCTTCPTYFNASQQRNPKPSTRWDPKFHNALYGDAKSFVRKLLSFCYSYVPGVMNPHAKVVQKWNKCLAIFCLIAIFVDPLFFFLLYVEKDNKCIVINWPLTTALVLFRCVNDFVYFLNILLQFRLAYVSRESRVVGAGDLVDHPKKIALHYLKGYFLIDLFVVFPLPQIMILFVLPNSLEGANYAKNLLRAAILVQYIPKLFRFLPLLIGQSPMGFIFESAWANFVINLLIFVLASHVVGSCWYLFGLQRVNQCLRDACHSSNIPECMKFIDCGRGHGNNQPGLRSDQWINNTQAVACLDPSPDGFSYGIYENAVPLTIETNVVKKYVYSLFWGFQQISTLAGNLEPSYFVWEVLFTMAIIGMGLLLFAILIGNIQNFLQALGRRKLEMQLRGRDVEQWMSHRRLPEDLRRRVRRAERYNWAATRGVNEEMLMENLPEDLQRDIRRHLFKFVKKIRLFALMDEPILDAICERLRQKTYIKGSKILSQGGLVEKMVFVVRGKLESIGEDGTRIPLSEGDSCGEELLTWYLEHSSVSTDGRKVRLPGQRLVSNRTVRCLTNVESFSLSASDIEEVTILFTRFLRSPCVQGALRYESPYWRSLAATRIQVAWRYRKKRLSRVNSSPSD* 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1748 766 CDD CAP_ED 598 714 IPR000595 -
Gso16g1748 766 Gene3D Helix hairpin bin 525 590 - -
Gso16g1748 766 Gene3D Jelly Rolls 596 720 IPR014710 -
Gso16g1748 766 SUPERFAMILY cAMP-binding domain-like 526 717 IPR018490 -
Gso16g1748 766 SMART cnmp_10 598 733 IPR000595 -
Gso16g1748 766 PANTHER NUCLEOTIDE GATED CHANNEL PROTEIN, PUTATIVE-RELATED 4 763 - -
Gso16g1748 766 Gene3D - 205 523 - -
Gso16g1748 766 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 4 763 - -
Gso16g1748 766 SUPERFAMILY Voltage-gated potassium channels 199 526 - -
Gso16g1748 766 Pfam Ion transport protein 206 525 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gso16g1748 766 ProSiteProfiles cAMP/cGMP binding motif profile. 598 666 IPR000595 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1748 Gso-Chr16 38089742 38098305 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1748 5 676 Ion Channels AT3G17700 61.380 0.0 808
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1748 K05391 - gmx:100781973 1537.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1748 16 38089742 38098305 Gso9g1389 9 37808438 37818340 GST