Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1745 ATGGAGTTTGGAAGTGGTTCTCCTGGTGATCGCCATCATCACCATGATGGTTCTTCTGATTCCCAGCGAAGGAAGAAGCGTTACCACCGTCACACAGCTAACCAGATTCAAAGGCTTGAATCGATGTTCAAGGAGTGTCCGCACCCAGATGAGAAGCAGAGATTGCAGTTGAGTAGGGAGTTAGGCTTGGCGCCTAGACAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCTCAGCATGAGAGAGCTGATAATTGTGCACTCCGGGCAGAGAATGATAAGATACGTTGTGAGAACATAGCCATAAGGGAAGCCTTGAAAAATGTTATCTGCCCCTCTTGTGGTGGTCCTCCTATGAATGATGATTGTTATTTTGATGAACAGAAGTTGAGATTGGAGAATGCCCAACTCAAAGAGGAGCTTGATAGAGTATCTAGCATTGCAGCTAAGTACATTGGAAGGCCAATTTCTCAACTCCCACCTGTTCAGCCTATCCACATATCTTCTCTGGACTTGTCAATGGGGACTTTTGCAAGCCAAGGGTTGGGTGGCCCTTCCCTTGATCTTGATCTTCTCCCAGGGAGTTCTTCATCATCCATGCCGAATGTGCCTCCTTTCCAACCCCCTTGTCTTTCGGACATGGATAAGTCCCTCATGTCAGACATTGCCTCAAATGCCATGGAGGAAATGATCAGGCTATTGCAAACAAATGAGCCCTTGTGGATGAAAGGTGCTGATGGGAGGGATGTGCTTGATCTTGATTCCTATGAAAGGATGTTCCCCAAGGCTAATAGTCACTTGAAGAACCCCAATGTTCACGTTGAAGCTTCTAGAGATTCAGGAGTTGTTATTATGAATGGCTTAACTTTGGTTGACATGTTTATGGACCCGAACAAGTGGATGGAGCTATTTTCCACCATTGTCACAATGGCTAGAACAATTGAGGTTATATCTTCTGGAATGATGGGTGGCCATGGTGGTTCTTTGCAATTGATGTATGAGGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAATTCTATTTCCTGCGTTACTGTCAACAAATTGAACAAGGCTTATGGGCAATAGTAGATGTTTCATATGATTTTACTCAAGATAACCAATTTGCTCCTCAATTTCGATCTCACCGTCTTCCTTCTGGTGTCTTTATCCAAGACATGCCTAATGGATATTCCAAGGTTACTTGGATTGAACATGTAGAGATTGAAGACAAAACCCCAGTTCATAGGCTCTATAGAAACATTATTTACAGTGGCATTGCATTTGGAGCACAAAGATGGCTAACTACACTTCAGAGGATGTGTGAAAGGATTGCTTGTCTATTGGTGACAGGAAATTCAACCCGTGATCTTGGAGGAGTGATTCCTTCTCCTGAGGGCAAGAGGAGCATGATGAAACTTGCACAAAGAATGGTCACCAATTTTTGTGCAAGCATTAGTTCATCAGCTGGCCACAGATGGACCACACTCTCTGGGAGTGGCATGAATGAGGTTGGAGTCAGAGTCACTGTGCACAAGAGCTCAGACCCTGGCCAACCTAATGGTGTGGTTCTAAGTGCAGCTACCACCATTTGGCTCCCCATCCCTCCACAAACTGTGTTCAATTTCTTTAAGGATGAAAAGAAAAGGCCTCAGTGGGATGTTCTTTCCAATGGCAATGCTGTGCAAGAGGTTGCTCATATAGCAAATGGTTCACACCCTGGTAACTGCATATCTGTGCTTCGAGCATTCAACTCAAGTCAAAACAACATGCTGATCCTCCAGGAGAGCTGTGTGGACTCCTCAGGTTCCCTAGTGGTGTACTGTCCAGTTGATCTGCCAGCCATCAACATAGCAATGAGTGGTGAGGACCCTTCTTACATCCCTCTCCTTCCCTCAGGTTTCACCATTTCCCCGGACGGCCAAGCCGACCAAGACGGCGGAGGAGCCTCAACCAGCACAAGCAGCAGGGTCATGGGGGGTGGTTCTGGTTCTGGTGGCTCACTCATCACTGTTGCATTCCAAATCCTAGTGAGTAGCTTGCCATCTGCCAAACTCAACATGGAGTCGGTGACAACTGTTAATAGCCTCATTGGCAACACTGTCCAACACATTAAGGCTGCTTTGAATTGTCCTAGTTCCTGA 2157 0.4599 MEFGSGSPGDRHHHHDGSSDSQRRKKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRAENDKIRCENIAIREALKNVICPSCGGPPMNDDCYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGTFASQGLGGPSLDLDLLPGSSSSSMPNVPPFQPPCLSDMDKSLMSDIASNAMEEMIRLLQTNEPLWMKGADGRDVLDLDSYERMFPKANSHLKNPNVHVEASRDSGVVIMNGLTLVDMFMDPNKWMELFSTIVTMARTIEVISSGMMGGHGGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYDFTQDNQFAPQFRSHRLPSGVFIQDMPNGYSKVTWIEHVEIEDKTPVHRLYRNIIYSGIAFGAQRWLTTLQRMCERIACLLVTGNSTRDLGGVIPSPEGKRSMMKLAQRMVTNFCASISSSAGHRWTTLSGSGMNEVGVRVTVHKSSDPGQPNGVVLSAATTIWLPIPPQTVFNFFKDEKKRPQWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNSSQNNMLILQESCVDSSGSLVVYCPVDLPAINIAMSGEDPSYIPLLPSGFTISPDGQADQDGGGASTSTSSRVMGGGSGSGGSLITVAFQILVSSLPSAKLNMESVTTVNSLIGNTVQHIKAALNCPSS* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1745 718 MobiDBLite consensus disorder prediction 649 666 - -
Gso16g1745 718 CDD homeodomain 24 83 IPR001356 GO:0003677
Gso16g1745 718 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Gso16g1745 718 Coils Coil 130 150 - -
Gso16g1745 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 16 716 IPR042160 -
Gso16g1745 718 SMART HOX_1 23 86 IPR001356 GO:0003677
Gso16g1745 718 MobiDBLite consensus disorder prediction 643 666 - -
Gso16g1745 718 MobiDBLite consensus disorder prediction 1 23 - -
Gso16g1745 718 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Gso16g1745 718 SUPERFAMILY Bet v1-like 469 710 - -
Gso16g1745 718 SUPERFAMILY Bet v1-like 216 449 - -
Gso16g1745 718 Pfam START domain 225 448 IPR002913 GO:0008289
Gso16g1745 718 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 16 716 - -
Gso16g1745 718 SMART START_1 224 448 IPR002913 GO:0008289
Gso16g1745 718 CDD START_ArGLABRA2_like 219 447 - -
Gso16g1745 718 Gene3D - 10 96 - -
Gso16g1745 718 MobiDBLite consensus disorder prediction 1 32 - -
Gso16g1745 718 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Gso16g1745 718 Gene3D - 225 448 IPR023393 -
Gso16g1745 718 SUPERFAMILY Homeodomain-like 6 82 IPR009057 -
Gso16g1745 718 ProSiteProfiles START domain profile. 215 451 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1745 Gso-Chr16 38028128 38033276 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1745 20 718 Homeobox Transcription Factor Family AT1G73360 66.950 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Gso16g1745 START 5.9e-47 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1745 K09338 - gmx:100785023 1368.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1745 16 38028128 38033276 Gso9g1385 9 37732888 37737565 GST
Gso5g2122 5 44145133 44149053 Gso16g1745 16 38028128 38033276 PCT
Gso8g0482 8 4446479 4451145 Gso16g1745 16 38028128 38033276 PCT
Gso16g1745 16 38028128 38033276 Gso5g2122 5 44145133 44149053 PCT
Gso16g1745 16 38028128 38033276 Gso8g0482 8 4446479 4451145 PCT