Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1744 ATGGAGATGCAGGACCAAATAGAAAGCACAAGATCAACCATATTTGGCTCAGCAAGTAACATCCATTCCAATGGTGAAAAGCAATCCGAAAATGTTGCTCATATACCTTCTGTTGGAAACAACCAAACTCCCAAGGTGAGGAAACCATATACCATTACTAAACAAAGGGAGAAGTGGACTGAGGAAGAGCATCAAAAGTTCCTTGAAGCTTTGAAATTGTATGGTCGTGGCTGGCGCCAAATTGAAGAGCATATAGGTACCAAAAATGCTGTTCAGATTCGAAGCCATGCTCAAAAGTTTTTCTCTAAGGTTGTGAGGGAATCTGAGGGCAGCGCTGAGAGTTCTATACAACCAATTAACATACCTCCTCCTCGGCCTAAGAGGAAACCCCTGCATCCATATCCCCGTAAATCAGTTAACTCTTTCAAAGGACACTGCATACCAAATGAAACAGAAATATCTCCATCTACAAACCTGTTAGTTGCAGAGAAAGACACCCCATCTCCAACCTCGGTGCTATCTACGGTTGGTTCGGAAGCATTTGGGTCTCAATTTTCAGAGCAGACTAACAGATGCCTTTCACCAAACTCTTGCACCACTGATATTCACTCAGTCAGCTTATCACCTGCTGAAAAGGAAAATGATTGCATGACATCCAAAGCATCCGAGGAGGAAGAGAAAGCATCACCAGCTTCACTTCCTTTATCCACTGTTTCTAACCCAAACATGTGCATGAAGCCTGAGTTTAGTTCCAAGGACACTTTCATAGAAGATGCTGCCAATATGCCACAAACCACTAGTATTAAGCTTTTTGGAAGAACGGTCTCTATGGTAGGTAATCAGAAGTCACTGAACATAGATGATGATGATGGTAAGCCAATAACTGTGAAGTCTGATGAAGTAGATGATGTTGAGAATGAGAAGCTTGGCCAATCAGGAGAATCCAAGCAAGTAGATACACAATTATCACTTGGTGTGGTTAGTGGTAACTGGATTATAACACCTGATGCTGATGGAGCTAATACAACCAGCATAGAGCCCCCAAAGGAGAACCTATGCTTCAGTGAATGTGCACCTGATGCATCTTTTCCGCAGTGGAGTTTGTACCAAGGCCTTCCACCTTTCTACCTGAGGCCATGCAATCAGGTCCTAAATCCCTTGCCTCTTAGGCCCTCTTTGAAAGTAAGAACAAGAGAGGAGGAGAGTTGTTGCACTGGTTCCAACACTGAATCAGTTTGTGACATGGAAAACCAAGGCAAGAACTCAGATGCTGTTGATTCTAAGTGTCAAAAATATCACAAGGAAGGAGCTGCACCCCAGAAGCGTGCAAGGGGGTTTGTACCATATAAAAGATGTTTATCTGAAAGAGATGGAAATTCTTTAATTGTTGATATGGAAGAGAGGGAGGGGCAACGAGCTCGTGTGTGCTCATAG 1434 0.4324 MEMQDQIESTRSTIFGSASNIHSNGEKQSENVAHIPSVGNNQTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKNAVQIRSHAQKFFSKVVRESEGSAESSIQPINIPPPRPKRKPLHPYPRKSVNSFKGHCIPNETEISPSTNLLVAEKDTPSPTSVLSTVGSEAFGSQFSEQTNRCLSPNSCTTDIHSVSLSPAEKENDCMTSKASEEEEKASPASLPLSTVSNPNMCMKPEFSSKDTFIEDAANMPQTTSIKLFGRTVSMVGNQKSLNIDDDDGKPITVKSDEVDDVENEKLGQSGESKQVDTQLSLGVVSGNWIITPDADGANTTSIEPPKENLCFSECAPDASFPQWSLYQGLPPFYLRPCNQVLNPLPLRPSLKVRTREEESCCTGSNTESVCDMENQGKNSDAVDSKCQKYHKEGAAPQKRARGFVPYKRCLSERDGNSLIVDMEEREGQRARVCS* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1744 477 MobiDBLite consensus disorder prediction 1 50 - -
Gso16g1744 477 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Gso16g1744 477 PANTHER SWI/SNF COMPLEX-RELATED 3 464 - -
Gso16g1744 477 PANTHER PROTEIN REVEILLE 7-RELATED 3 464 - -
Gso16g1744 477 SMART sant 55 103 IPR001005 -
Gso16g1744 477 ProSiteProfiles SANT domain profile. 54 105 IPR017884 -
Gso16g1744 477 Pfam Myb-like DNA-binding domain 56 99 IPR001005 -
Gso16g1744 477 Gene3D - 58 105 - -
Gso16g1744 477 MobiDBLite consensus disorder prediction 111 133 - -
Gso16g1744 477 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Gso16g1744 477 MobiDBLite consensus disorder prediction 1 49 - -
Gso16g1744 477 CDD SANT 58 101 IPR001005 -
Gso16g1744 477 MobiDBLite consensus disorder prediction 204 242 - -
Gso16g1744 477 SUPERFAMILY Homeodomain-like 50 104 IPR009057 -
Gso16g1744 477 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 54 103 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1744 Gso-Chr16 37998191 38002632 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gso16g1744 Myb_DNA-binding 2.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1744 - - gmx:778089 934.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1744 16 37998191 38002632 Gso9g1384 9 37700324 37704818 GST