Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1743 ATGGCTAACAACGTCGTTGTTGTTCTTAAGGTAGCTCCTGTTTCTCTGCCTCCATTTCCCATAACAAACAATGCTCTCACTTTCAAGAGCCAAAGACACACACTTCATCTGAATTGCTTCCAAACCAAAAACAGAACAACCTCATTCCCTTCTTCCTCGTCAATCCTCAGAAACAAAGCTAGTTGCTCTGTGTTGGCGTGTCTCCCTCCTGAATCCTCAACCTCATCTTCCACTGCTAAACCCTCTTTTCCTTCTCCTCAAACTAAGCTTTATGTCAGTGGGCTATCATTTCGTACCACTGAAGAGAGTTTGCGAAATGCATTTAAGAATTTTGGTCAACTTGTGGAAGTCAAGCTGGTGATGGATAGAATTGCAAATAGACCAAGAGGGTTTGCTTTTCTTCGTTATGCAACTGAAGAAGAGTCGCAGAAGGCTATTGAGGGAATGCATGGAAAGTTCTTGGATGGAAGGGTCATATTTGTGGAAGTTGCCAAACCGAGATCAGAGTTAGCGCCAAGGAAACAGGAAGACACTAGATTGTAA 543 0.4309 MANNVVVVLKVAPVSLPPFPITNNALTFKSQRHTLHLNCFQTKNRTTSFPSSSSILRNKASCSVLACLPPESSTSSSTAKPSFPSPQTKLYVSGLSFRTTEESLRNAFKNFGQLVEVKLVMDRIANRPRGFAFLRYATEEESQKAIEGMHGKFLDGRVIFVEVAKPRSELAPRKQEDTRL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1743 180 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 166 IPR000504 GO:0003723
Gso16g1743 180 PANTHER NUCLEOLAR PROTEIN 8 10 176 - -
Gso16g1743 180 PANTHER ORGANELLE RRM DOMAIN-CONTAINING PROTEIN 6, CHLOROPLASTIC 10 176 - -
Gso16g1743 180 SUPERFAMILY RNA-binding domain, RBD 77 172 IPR035979 GO:0003676
Gso16g1743 180 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 159 IPR000504 GO:0003723
Gso16g1743 180 Gene3D - 43 178 IPR012677 -
Gso16g1743 180 SMART rrm1_1 89 162 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1743 Gso-Chr16 37994665 37997801 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1743 79 176 Eukaryotic Initiation Factors Gene Family AT3G16380 35.714 1.33e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1743 - K13195 gmx:100305561 338.191