Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1740 ATGGTCAGAAAGAGAAGAACTGAACTACCAAGTGGGGGTGAAAGCTCTGAGGCTCAACACCCTTCTGAAAGGAGTGCACCACCGCCCCAACAACAAGCTGCTGCTGCTGCCCCAGGAGGGGCTGGACCCCAAGGAGGCAGAGGCTGGGGTCCCCAAGGAGGAAGAGGAGGGGGCCGCAGCCGTGGGATGCCCCAACAGCAATATGGTGCCCCTCCTGATTATCAAGGTAGGGGAAGGGGAGGGCCTTCTCAGCAAGGAGGCCGTGGAGGATATGGCAGTGGCCGAAGTGGTGGTGGTGGTGGTATGGGCAGTGGCCGTGGCGTTGGTCCTTCATATGGTGGCCCATCGAGGCCACCGGCACCCGAGCTGCACCAAGCAACCTCAGTTCAGTCATATCAAACTGGGGTGAGTTCTCAGCCTGCATCATCTGAGGCCAGTTCATCCCTGCCGCCAGAGCCTATTGATTTGGAACAGTCAATGGGGCAGATGGTGCTTCATTCTGAACCTGCTCCTACTCCTCCTCCTGCAAGTAAATCATCAATGAGGTTTCCCCTTCGACCTGGAAAGGGTAGCTATGGCACCAAGTGTGTTGTTAAGGCTAATCATTTCTTTGCTGAGTTACCCAACAAAGATCTGCATCAATATGATGTTACAATTACTCCAGAAGTGATATCAAGAGGGGTGAACCGTGCTGTTATGGAGCAGTTGGTGAGACTGTACCGGGAATCTCACTTGGGTAAGAGACTCCCTGCTTATGATGGACGCAAGAGCCTCTATACTGCTGGACCACTTCCTTTTATGTCAAAGGAGTTCAGAATTGTTCTCGTTGATGATGATGAAGGAGCTGGAGGCCAGAGGAGGGACAGGGAGTTCAAGGTTGTGATAAAATTGGCTGCACGTGCAGACCTTCACCATTTGGGACTCTTTTTACAAGGAAGGCAAACTGATGCTCCTCAAGAGGCTTTGCAGGTCCTTGACATTGTTCTGCGCGAACTCCCTACTACAAGGTATTGTCCTGTCGGAAGATCATTTTATTCACCTGATTTGGGCAGAAGACAGCCTTTAGGTGAGGGATTGGAAAGCTGGCGTGGTTTCTACCAGAGTATTCGGCCTACACAGATGGGGCTATCACTGAACATTGATATGTCTTCCACTGCATTTATTGAGCCATTGCCAGTAATTGATTTCGTAACTCAACTGCTGAACAGAGATGTATCCGCCCGGCCACTTTCTGATGCTGATCGTGTGAAGATCAAGAAAGCTCTCCGGGGTATCAAAGTTGAAGTGACACATCGTGGAAACATGAGAAGAAAATATCGTATCTCTGGTCTGACTTCACAGGCAACCAGAGAATTGACATTCCCGGTAGATGAAAGGGGAACCATGAAATCTGTTGTGGAGTACTTCTATGAGACATATGGGTTTGTCATTCAACATACTCAGTGGCCTTGTCTGCAAGTTGGCAATGCACAGAGACCAAACTATTTGCCAATGGAGGTTTGCAAGATAGTGGAGGGTCAAAGGTACTCGAAAAGGCTTAATGAGAGGCAAATCACTAATTTGCTGAGAGTTACATGCCAGCGTCCTGGTGAGAGGGAGCGTGATATCATGCAGACAGTACACCACAACGCATACCACGAAGATCCTTATGCTAAAGAATTTGGAATCAAGATTAGCGAGAAACTTGCTCAAGTTGAAGCTCGCATCCTTCCTGCTCCATGGCTCAAATATCACGATACGGGCAGAGAAAAGGATTGTCTTCCTCAAGTTGGGCAATGGAATATGATGAATAAGAAAATGGTTAATGGGGGGACAGTTAACAACTGGTTCTGCATAAACTTTTCAAGGAATGTTCAAGATAGTGTTGCCCGTGGTTTTTGCTATGAACTTGCTCAGATGTGTTATATATCTGGAATGGCATTTACACCTGAGCCAGTAGTCCCCCCAGTCAGTGCTCGCCCTGATCAAGTGGAAAAGGTTCTTAAAACTCGGTATCATGATGCCAAGAACAAACTGCAAGGAAGAGAGCTTGATTTGCTCATCGTTATCTTGCCCGATAATAATGGATCTCTTTATGGTGATCTCAAACGGATATGTGAGACTGACCTAGGACTTGTTTCACAATGTTGCTTAACTAAGCATGTCTTCAAAATGAGCAAGCAGTACCTTGCAAATGTTGCTTTGAAAATTAATGTCAAAGTTGGAGGGAGAAACACTGTACTGGTTGATGCGCTCTCACGACGCATTCCCTTGGTCAGTGACAGACCTACAATTATTTTTGGAGCTGATGTGACTCATCCACATCCTGGAGAGGATTCAAGCCCATCAATTGCAGCAGTTGTGGCTTCGCAAGACTATCCTGAAATTACAAAGTATGCTGGTTTAGTTTGTGCCCAAGTTCATAGGCAGGAACTCATTCAGGATCTTTTCAAACAATGGCAAGATCCAGTCAGAGGAACAGTGACTGGTGGAATGATCAAGGAACTTCTTATATCTTTTAGGAGAGCTACAGGACAAAAGCCACAACGCATCATATTTTATAGGGATGGTGTGAGTGAGGGACAGTTTTATCAGGTTCTACTGTTTGAGCTTGATGCTATTCGAAAGGCATGTGCATCCCTGGAACCCAATTATCAGCCTCCTGTGACTTTTGTGGTGGTTCAAAAGCGTCACCACACAAGGCTCTTTGCTAGCAACCATCATGATAAGAGTTCTGTTGACAAGAGTGGCAACATATTGCCTGGCACTGTTGTTGACTCCAAAATCTGCCATCCCACCGAATTTGACTTTTATCTCTGCAGCCATGCTGGAATACAGGGTACAAGCCGTCCTGCTCACTACCATGTGTTGTGGGATGAAAACAATTTTACTGCTGATGCCTTGCAAACACTCACCAACAATCTTTGCTACACATATGCTCGGTGCACCCGGTCTGTTTCAATCGTGCCTCCTGCATACTATGCTCACCTTGCTGCATTCCGCGCAAGGTTTTACATGGAACCAGAGACGTCGGATAGTGGCTCTATGACAAGTGGTGCTGTTGCAGGCCGTGGGATGGGCGGTGTAGGGCGTAGCACGCGTGTACCTGGTGCCAATGCTGCTGTGAGACCATTGCCTGCACTCAAGGAGAACGTCAAGAGAGTTATGTTTTATTGTTAA 3159 0.4739 MVRKRRTELPSGGESSEAQHPSERSAPPPQQQAAAAAPGGAGPQGGRGWGPQGGRGGGRSRGMPQQQYGAPPDYQGRGRGGPSQQGGRGGYGSGRSGGGGGMGSGRGVGPSYGGPSRPPAPELHQATSVQSYQTGVSSQPASSEASSSLPPEPIDLEQSMGQMVLHSEPAPTPPPASKSSMRFPLRPGKGSYGTKCVVKANHFFAELPNKDLHQYDVTITPEVISRGVNRAVMEQLVRLYRESHLGKRLPAYDGRKSLYTAGPLPFMSKEFRIVLVDDDEGAGGQRRDREFKVVIKLAARADLHHLGLFLQGRQTDAPQEALQVLDIVLRELPTTRYCPVGRSFYSPDLGRRQPLGEGLESWRGFYQSIRPTQMGLSLNIDMSSTAFIEPLPVIDFVTQLLNRDVSARPLSDADRVKIKKALRGIKVEVTHRGNMRRKYRISGLTSQATRELTFPVDERGTMKSVVEYFYETYGFVIQHTQWPCLQVGNAQRPNYLPMEVCKIVEGQRYSKRLNERQITNLLRVTCQRPGERERDIMQTVHHNAYHEDPYAKEFGIKISEKLAQVEARILPAPWLKYHDTGREKDCLPQVGQWNMMNKKMVNGGTVNNWFCINFSRNVQDSVARGFCYELAQMCYISGMAFTPEPVVPPVSARPDQVEKVLKTRYHDAKNKLQGRELDLLIVILPDNNGSLYGDLKRICETDLGLVSQCCLTKHVFKMSKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDYPEITKYAGLVCAQVHRQELIQDLFKQWQDPVRGTVTGGMIKELLISFRRATGQKPQRIIFYRDGVSEGQFYQVLLFELDAIRKACASLEPNYQPPVTFVVVQKRHHTRLFASNHHDKSSVDKSGNILPGTVVDSKICHPTEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADALQTLTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPETSDSGSMTSGAVAGRGMGGVGRSTRVPGANAAVRPLPALKENVKRVMFYC* 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1740 1052 MobiDBLite consensus disorder prediction 123 153 - -
Gso16g1740 1052 Gene3D - 569 742 - -
Gso16g1740 1052 SUPERFAMILY Ribonuclease H-like 665 1000 IPR012337 -
Gso16g1740 1052 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 87 1051 - -
Gso16g1740 1052 ProSiteProfiles PAZ domain profile. 391 505 IPR003100 GO:0005515
Gso16g1740 1052 CDD Piwi_ago-like 549 999 IPR045246 -
Gso16g1740 1052 Pfam N-terminal domain of argonaute 194 329 IPR032474 -
Gso16g1740 1052 CDD PAZ_argonaute_like 390 504 - -
Gso16g1740 1052 Pfam Argonaute linker 1 domain 339 389 IPR014811 -
Gso16g1740 1052 SUPERFAMILY PAZ domain 197 542 IPR036085 GO:0005515
Gso16g1740 1052 SMART PAZ_2_a_3 395 527 IPR003100 GO:0005515
Gso16g1740 1052 Gene3D - 748 1052 IPR036397 GO:0003676
Gso16g1740 1052 PANTHER PROTEIN ARGONAUTE 1A 87 1051 - -
Gso16g1740 1052 SMART Piwi_a_2 679 1000 IPR003165 GO:0003676
Gso16g1740 1052 SMART DUF1785_2 338 390 IPR014811 -
Gso16g1740 1052 ProSiteProfiles Piwi domain profile. 679 1000 IPR003165 GO:0003676
Gso16g1740 1052 MobiDBLite consensus disorder prediction 1 186 - -
Gso16g1740 1052 MobiDBLite consensus disorder prediction 12 29 - -
Gso16g1740 1052 Pfam Argonaute linker 2 domain 531 577 IPR032472 -
Gso16g1740 1052 Pfam Mid domain of argonaute 588 663 IPR032473 -
Gso16g1740 1052 Pfam Glycine-rich region of argonaut 69 170 IPR024357 -
Gso16g1740 1052 Pfam PAZ domain 395 522 IPR003100 GO:0005515
Gso16g1740 1052 Pfam Piwi domain 680 999 IPR003165 GO:0003676
Gso16g1740 1052 Gene3D paz domain 384 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1740 Gso-Chr16 37953081 37960199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1740 73 1052 Eukaryotic Initiation Factors Gene Family AT1G48410 81.136 0.0 1620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1740 K11593 - gmx:100778754 1939.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gso16g1740 16 37953081 37960199 Gso9g1378 9 37610910 37617986 GST