Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1725 ATGGCTGCAACAACACGTTCTCCTGCATCCATCTATGATGTGTTCCTCAGCTTCAGAGGTTTAGACACACGCCATGGTTTCACTGGAAATCTCTACAAAGCTCTTGATGACAGAGGAATCTACACTTTCATTGATGATCAGGAGCTTCCAAGAGGAGACGAAATAACACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGTAACCGTCCTTCTCTGCAAGAGGAAAGGGCTGTTGGTTATACCGGTCTTTTATAACGTAGATCCTTCTGATGTCAGACAACAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAACTGCAGAAATGGAGGATGGCTTTGCATCAAGTAGCTGACTTGTCTGGCTATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATCCAGAGTATTGTTGAGCAGGTTTCTAGGGAGATTAATCGTACTCCTTTACATGTTGCGGATTATCCAGTTGGTCTTGGGTCACAAGTGATAGAGGTAAGGAAGCTTTTGGATGTTGGATCCCATGATGTTGTCCACATCATAGGGATCCATGGAATGGGTGGGTTGGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTCTCCATTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCATTCTTTCAAAATTACTTGGTGAGAAGGACATCAACTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCAACGAAAGAAGGTTCTCTTGATTTTAGATGATGTTGATAAGCGCCAGCAGTTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATATTCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCAGAGTGCTGCTCTTCAATTGCTTAAGTGGAATGCTTTTAAAAGAGAAAAAAATGATCCAAGTTATGAGGACGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAATCATAGGTTCCAACTTGTTTGGAAAAACTGTAGCAGAATGGGAATCTGCTATGGAACATTATAAAAGAATTCCTAGTGATGAAATCCTAGAGATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTGTTGTTTAAAAGGATGCAAATTGACAGAGGTTGAACATATGCTACGCGGTCTTTATGATAACTGCATGAAACATCACATTGATGTGTTGGTTGACAAATCTCTCACAAAGGTTAGGCATGGTATAGTTGAAATGCATGACCTAATTCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCAGGGAAGCGCAAGAGATTATGGTCACCAAAAGATATAATTCAAGTTTTAAAACACAACACGGGAACTAGTAAAATTGAAATCATATATGTGGATTTCTCCATATCTGACAAAGAAGAAACAGTGGAATGGAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGAAAATTTTCCAAAGGTCCCAATTATTTTCCACAAGGTTTGAGAGTACTGGAATGGCACAGATATCCTTCAAATTGTTTACCGTCTAACTTTGATCCGATCAACCTTGTTATATGCAAGTTACCTGACAGTTCCATGACGTCATTTGAGTTCCATGGCTCATCGAAGAAGTTGGGGCATCTAACAGTTTTGAAGTTTGACTGGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAGGGAACTTTCATTTCAATGGTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAATGCTTATGGTTGCAGGAAGCTTACGAGTTTTCCGCCCCTCCACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAGAGAGACTTGATTTGCATGGCCTTCCGATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCAACAGTTATCCATGTTTGGCTGTGGAATTGTTCAGTTACGATGTAGCTTAGCCATGATGCCCAAACTGTCTGCATTCAAATTTGTAAATTGCAACAGGTGGCAATGGGTAGAATCGGAAGAAGCTGAAGAAAAAGTGGGCTCAATAATATCTTCAGAGGCACGTTTTTGGACACATTCGTTTTCTGCCAAGAATTGCAATCTATGTGATGATTTTTTTTTAACAGGTTTCAAGAAGTTTGCTCATGTAGGATATTTAAATCTATCGAGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAATTGCAATTTTTAGGAAGTCTTAACGTGAGTCATTGCAAGCATCTTCAGGAAATTAGAGGGATTCCACAGAACTTAAGGTTATTCAATGCAAGAAACTGTGCATCCTTGACATCCTCGAGTAAAAGCATGCTTTTAAATCAGGAACTGCATGAGGCTGGAGGAACCCAGTTTGTGTTTCCAGGAACAAGAATACCAGAGTGGTTGGATCACCAAAGCAGTGGACATTCAAGTTCTTTCTGGTTTCGTAATAAATTCCCTCCCAAACTTCTTTGTCTTCTTATTGCACCTGTCTTGGGTGACAGCGGGTATTTTTTCGTTAAACCCAATGTGTCAATCAATGGAAAATTTCTAAAATATTTTGGAAGTGAGGAGATAAAAAGTATGTTGAAATTGGATCATACATATATCTTTGATCTCCAAGATTTTTGTTTCAACGATAATAATTGGTTTGAAGAAGTGGCTAGGGAAAAGGAATGGAACCATGTGGAGGTTAGATATCAAAGTGTGTTAGACTATGAAAAGCAAAAAAGAAAAGAAGGAGTGTTAGACTTAGAGAGCTCATTCATTAAAGGAAGTGGAATCCATATATTCAGAGAAGAAGGCAGTATGGAGGAAGATATTCGATTTGATGATCCATATCTCAGCAGCTCTGCATCAGAAAGCTCCTCCTTCCTACAAACCATAGCTTTGGGGACACGCAAGTTTTCCATAGCTTTTTTCTTATTTTTTTCATGTTTTTTATTTTATTATTTTGGTTTCAGTTGTCAAAAATTCACTTAA 3318 0.3819 MAATTRSPASIYDVFLSFRGLDTRHGFTGNLYKALDDRGIYTFIDDQELPRGDEITPALSKAIQESRIAITVLSQNYASSSFCLDELVTVLLCKRKGLLVIPVFYNVDPSDVRQQKGSYGEAMAKHQKRFKAKKEKLQKWRMALHQVADLSGYHFKDGDAYEYKFIQSIVEQVSREINRTPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSIILSKLLGEKDINLTSWQEGASMIQHRLQRKKVLLILDDVDKRQQLKAIVGRPDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKNDPSYEDVLNRVVTYASGLPLALEIIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCLKGCKLTEVEHMLRGLYDNCMKHHIDVLVDKSLTKVRHGIVEMHDLIQDMGREIERQRSPEEPGKRKRLWSPKDIIQVLKHNTGTSKIEIIYVDFSISDKEETVEWNENAFMKMENLKILIIRNGKFSKGPNYFPQGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSMTSFEFHGSSKKLGHLTVLKFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDDSIGFLNKLKKLNAYGCRKLTSFPPLHLTSLETLELSHCSSLEYFPEILGEMENIERLDLHGLPIKELPFSFQNLIGLQQLSMFGCGIVQLRCSLAMMPKLSAFKFVNCNRWQWVESEEAEEKVGSIISSEARFWTHSFSAKNCNLCDDFFLTGFKKFAHVGYLNLSRNNFTILPEFFKELQFLGSLNVSHCKHLQEIRGIPQNLRLFNARNCASLTSSSKSMLLNQELHEAGGTQFVFPGTRIPEWLDHQSSGHSSSFWFRNKFPPKLLCLLIAPVLGDSGYFFVKPNVSINGKFLKYFGSEEIKSMLKLDHTYIFDLQDFCFNDNNWFEEVAREKEWNHVEVRYQSVLDYEKQKRKEGVLDLESSFIKGSGIHIFREEGSMEEDIRFDDPYLSSSASESSSFLQTIALGTRKFSIAFFLFFSCFLFYYFGFSCQKFT* 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1725 1105 SMART till_3 11 150 IPR000157 GO:0007165
Gso16g1725 1105 Pfam NB-ARC domain 207 412 IPR002182 GO:0043531
Gso16g1725 1105 Gene3D - 346 430 IPR042197 -
Gso16g1725 1105 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 917 IPR044974 GO:0006952
Gso16g1725 1105 Gene3D - 10 177 IPR035897 -
Gso16g1725 1105 Gene3D Ribonuclease Inhibitor 522 793 IPR032675 -
Gso16g1725 1105 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1725 1105 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1725 1105 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1725 1105 PRINTS Disease resistance protein signature 692 708 - -
Gso16g1725 1105 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Gso16g1725 1105 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 440 IPR027417 -
Gso16g1725 1105 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 917 - -
Gso16g1725 1105 Gene3D Ribonuclease Inhibitor 801 918 IPR032675 -
Gso16g1725 1105 Gene3D - 178 341 IPR027417 -
Gso16g1725 1105 Pfam TIR domain 12 180 IPR000157 GO:0007165
Gso16g1725 1105 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 153 IPR035897 -
Gso16g1725 1105 SUPERFAMILY "Winged helix" DNA-binding domain 416 523 IPR036390 -
Gso16g1725 1105 CDD AAA 192 329 - -
Gso16g1725 1105 SUPERFAMILY L domain-like 549 891 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1725 Gso-Chr16 37798059 37804677 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1725 7 749 WRKY Transcription Factor Family AT4G12020 30.809 2.31e-80 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1725 - - gmx:106794133 2174.44