Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1724 ATGGCTGCTACAACACGTTCCCTTGCATCCAAATACGATGTGTTCCTCAACTTCAGAGGGGAAGACACGCGCCATGGTTTTACTGGCAATCTCTACAAGGCTCTTCATGACAGGGGAATCTACACTTTCAATTATGAGCTGGAGCTTCTGAGAGGAGAGAAAATAGTACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTGAAAACTATGCTTATTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTTGACTACAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAAAGTAGATCCTTATTATGTCAGCCACCAGCGAGGTAGTTATGGAGAAGCAATGGCTAAGCATGAGAAAAGGTTCGAATCTAAGATGGAGAAGCTGCAGAAATGGAGGACGGCTTTGCATCAAGTAGCTGACTTGTCTGGCTATCATTTCGAAGATGGAGATGCATATGAATTCAAATTTATTGAGAGTATTGTTGAGGAGCTCTCTAGGAAGATTAGTCGGGCTACTTTACCTGTTGGGGATTATCAAGTTGGTCTAGAGTCACAAGTGACAGAGGTAATGAAGCTTTTGGATGTTGGATCCCATGATGGTGTCCACATCATAGGGATCCATGGAATAGGCGGGTTAGGAAAAACAACACTTGCTCTGGCAGTATATAATTTGATTGCTCTCCAATTTGATGAATCCTGTTTTCTTGAAAACGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCATTATTTCAAAATTACTTGGTGAGAAGGACATCAACTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAAAGTAGGCTCCGAAGAAAGAAGGTTCTCTTGATTTTAGACGATGTCAACAAGCGCGAGCAATTAAAGGCTTTTGTTAGAAGATCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATATTCTAAAATATCATGAGGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCAGAGTGCTGCTCTTCAATTGCTTAAGTGGAATGCTTTTAAAAGAGAAAAAATTGATCCAAGTTATGAGGACGTCTTGAATCGTGTAGTAGCTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTCATAGGCTCGGCCTTGTTTGAAAAAACTGTAGCAGAATGGGAATCTGCTGTGGAACATTATAAAAGAATTCCCAGTAATGAAATCCAAGAGATACTAAAAGTAAGCTTTGATGCTTTGGAGGAAGAACAAAAGAATGTTTTTCTTGATATTGCTTATTTCTTGAAAGGGTATAAATGGAAAGAGGTTGATGATATACTCCGTGCTCTTTATGGTAACTGCAAGTATCATATTGCGGTGTTGGTTGAAAAATCTCTCATAAAGCATAAGCGCTCTAATAGTGATACTGTTGAAATGCACGACCTGATTCAGGACATGGGTAGAGAAATTGGGCGGCAGAGATCACCAGAAGAGCCCTGGAAGTGCAAGAGATTATGGTCACCAAAAGATACAATTCAAGTTTTAAAACACAACACGGGAACTAGTAAAATTGAAATCATATGTCTGGATTGCTCCATATCTGAGAAAGAAGAAACAGTGGAATGGAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGCAAATTTTCCAAAGCTCCCAGTTATTTTCCAGAAGGTTTGAGAGTACTGGAATGGCACAGATATCCTTCAAATTGTTTACCATCTAACTTTAATCCGAACAACCTTGTTATATGCAACTTACCTGACAGTTCCATGACGTCATTTGAGTTCCATGGCTCATCGAAGGCATGTTTAAAGAGTATATTTTCCTCATTGCATGGCTCATCGAAGAAGCTCGGGCATCTAACAGTTTTGAATTTTGACTGGTGCAAATTTTTAACCCAGATACCTGATGTATCTGATCTTCCAAATTTGAGGGAACTTTCATTTCAATGGTGTGAGAGTTTAGTTGCAGTTGATGAGTCAATTGGTTTTCTGAAGAAACTTAAAATATTGAATGCTGCTGGTTGCAGGAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCCAGTCTAGAGTATTTGCCAGAAATATTAGGAGAGATGGAAAACATAAGGGAACTTTCATTTCAATGGTGTGAGAGTTTAGTTGCAGTTGATGAGTCAATTGGTTTTCTGAAGAAACTTAAAATATTGAATGCTGCTGGTTGCAGGAAGCTTACGAGTTTTCCACCTCTCAACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCCAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAAAGGCACTTCATTTGGAACGCCTTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCGTGAGATAACCCTGAGGAGGTGTAGAATTGTTCGGTTACGATGTAGCTTAGCCATGATGCCCAATCTGTTTCGATTCCAAATTAGAAATTGCAACAGCTGGCAATGGGTAGAATCGGAAGCAGGTGAAGAAAAAGTGGAGGTTAGATATCCAAATGTGTTAGACTTAGAGAGCTCTGCATCAGAAAGCCCCTCCTTGCTACAAACCATAGCTTTGGGGACACGCAAGTTTTCCGTAGCTTTTTTCTTATTTTTTTCATGTTTTTTATTTTATTATTTTGGTTTAAGTTGTCAAAAATTCACTTAA 2799 0.3905 MAATTRSLASKYDVFLNFRGEDTRHGFTGNLYKALHDRGIYTFNYELELLRGEKIVPALSKAIQESRIAITVLSENYAYSSFCLDELVTILDYKSEGLLVIPVFYKVDPYYVSHQRGSYGEAMAKHEKRFESKMEKLQKWRTALHQVADLSGYHFEDGDAYEFKFIESIVEELSRKISRATLPVGDYQVGLESQVTEVMKLLDVGSHDGVHIIGIHGIGGLGKTTLALAVYNLIALQFDESCFLENVREESNKHGLKHLQSIIISKLLGEKDINLTSWQEGASMIQSRLRRKKVLLILDDVNKREQLKAFVRRSDWFGPGSRVIITTRDKHILKYHEVERTYEVKVLNQSAALQLLKWNAFKREKIDPSYEDVLNRVVAYASGLPLALEVIGSALFEKTVAEWESAVEHYKRIPSNEIQEILKVSFDALEEEQKNVFLDIAYFLKGYKWKEVDDILRALYGNCKYHIAVLVEKSLIKHKRSNSDTVEMHDLIQDMGREIGRQRSPEEPWKCKRLWSPKDTIQVLKHNTGTSKIEIICLDCSISEKEETVEWNENAFMKMENLKILIIRNGKFSKAPSYFPEGLRVLEWHRYPSNCLPSNFNPNNLVICNLPDSSMTSFEFHGSSKACLKSIFSSLHGSSKKLGHLTVLNFDWCKFLTQIPDVSDLPNLRELSFQWCESLVAVDESIGFLKKLKILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYLPEILGEMENIRELSFQWCESLVAVDESIGFLKKLKILNAAGCRKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENIKALHLERLPIKELPFSFQNLIGLREITLRRCRIVRLRCSLAMMPNLFRFQIRNCNSWQWVESEAGEEKVEVRYPNVLDLESSASESPSLLQTIALGTRKFSVAFFLFFSCFLFYYFGLSCQKFT* 933
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1724 932 Pfam NB-ARC domain 192 422 IPR002182 GO:0043531
Gso16g1724 932 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Gso16g1724 932 Gene3D - 346 430 IPR042197 -
Gso16g1724 932 SMART till_3 11 150 IPR000157 GO:0007165
Gso16g1724 932 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 183 440 IPR027417 -
Gso16g1724 932 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1724 932 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1724 932 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1724 932 PRINTS Disease resistance protein signature 709 725 - -
Gso16g1724 932 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 739 - -
Gso16g1724 932 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 740 876 - -
Gso16g1724 932 Pfam TIR domain 11 177 IPR000157 GO:0007165
Gso16g1724 932 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 739 IPR044974 GO:0006952
Gso16g1724 932 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 740 876 IPR044974 GO:0006952
Gso16g1724 932 SUPERFAMILY L domain-like 488 863 - -
Gso16g1724 932 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 153 IPR035897 -
Gso16g1724 932 Gene3D Ribonuclease Inhibitor 709 778 IPR032675 -
Gso16g1724 932 Gene3D Ribonuclease Inhibitor 779 903 IPR032675 -
Gso16g1724 932 Gene3D Ribonuclease Inhibitor 538 708 IPR032675 -
Gso16g1724 932 Gene3D - 9 174 IPR035897 -
Gso16g1724 932 Gene3D - 175 341 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1724 Gso-Chr16 37789061 37792858 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1724 710 866 WRKY Transcription Factor Family AT4G12020 34.591 6.50e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1724 - - gmx:100817954 1159.44