Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1721 ATGGCTGCAACGACACGTTCCCTTGCATCCATCTACGATGTGTTCCTCAGCTTTAGAGGGGAAGACACACGCCATGGTTTCACTGGCAACCTCTACAAAGCTCTTGATAACAGGGGAATCTACACTTTCATTGATGATCAGGAGCTTCCCAGAGGAGACGAAATAACACCTGCACTTTCCAAGGCAATTCAAGAGTCCAGGATTGCTATTATTGTGCTTTCTCAAAACTATGCTTCTTCCTCGTTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTATAAGGTAGATCCTTCGGATGTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAGCTGCAGAAATGGAGGATGGCTTTGAAACAAGTAGCTGACTTGTCTGGCTATCATTTCGAAGATGGAGATGCATATGAATACAAGTTTATTGGGAGTATTGTTGAGGAGCTCTCTAGGAAGATTAGTCGTGCTTCTTTACATGTTGCGGATTATCCAGTTGGTCTAGAGTCACAAGTGACAAAGGTAATGAAGCTTTTGGATGTTGCATCCCATGATGTTGTCCACATCATAGGGATTCATGGAATGGGCGGATTAGGAAAAACAACACTTGCTCGGGAAGTTTATAATTTGATTGCTCTCCCTTTTGATGAATCCTGTTTTCTTCAAAACGTGAGAGAAGAATCAAATAAACATGGTTTAAAACACCTTCAAAGCATCCTTCTTTTAAAATTACTTGGGGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCGACGAAAGAAGGTTCTCTTGATTTTAGACGATGTTGACAAGCGCGAGCAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATTGTTACGACTCGGGACAAACATCTGCTAAAATATCATGGCGTTGAAAGAACTTATGAGGTGAAGGTTTTGAATCACAATGCTGCTCTTCAATTGCTTACGAGGAATGCTTTTAAAAGAGGAAAAATTGATCCAAGTTATGAGGACGTCTTGTATCGTGTGGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTCATAGGTTCCAACTTGTTTGAAAAAACTGTAACAGAATGGGAATCTGCTCTTGAACATTATAAGAGAATTCCCAGTGATGAAATCCTAGAGATACTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTGTTTCTTGACATTGCTTGTTGCTTCAAAGGGTATAAATGGACAGAGGTTGATGATATACTCGGTGCTCTTTATGGTAACTGCAAGAAGCATCATCTTGGGGTGTTGGTTGAAAAATCTCTCATAAAGCTTGACTTGTTTGATAATGTTGAAATGCACGACCTGATTCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCCGGGAAGTGCAAGAGATTATGGTTACCAAAAGATATAATTCAAGTTTTAAAACACAACACGGGAACTAGTAAAATTGAAATCATATGTCTGAATTTCTCCATATCTCACAAAGAAGAAACAGTGGAATGGAGTGGAAACGCCTTCGTGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGGCAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAGGTTTGAGAGTACTGGAATGGCATAGATATCCTTCAAATTGTTTACCGTCTAACTTTGATCCGATCAACCTTGTTATATGCAAGTTACCTGACAGTTCCATCACGTCATTTGAGTTCCATGGCCCATCCAAGAAGTTGGGGCATCTAACAGTTTTGAATTTTGACGGGTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAAGGAACTTTCATTTAAAAAGTGCGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAGTGCTTATGGTTGCAGCAAGCTTACGAGTTTTCCGCCTCTCAACTTGACCTCTCTTGAAACACTTGAACTTTCTCACTGTTCGAGTCTTGAGTATTTTCCAGAAATATTAGGAGAGATGGAAAACATAGAGAGACTTGAATTGAATGGCCTTCCCATAAAAGAATTGCCATTTTCATTTCAAAATCTTATTGGACTCCGGTTGTTAACCCTGTGGAACTGTGGAATTGTTCAGTTACGATGTAGCTTAGCCATGATGCCCAATCTGTTTCAATTCCAAATTGAAAAATGCAACAGGTGGCAATGGGTAGAATCGGACGAAGGTGAAGAAAAAGTGGGCTCAATAATATCTTCAGAGGCACGTTTTGGGACACATTCGTTTTCTGCCAAGAATTGCAATCTATGTGATGATTTTTTTTTAACAGGTTTCAAGAGGTTTGCTCATGTAGGAGATTTAAATCTATCGGGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAATTGCAATTTTTACATAGTCTTGATGTGAATGATTGCCAGCATCTTCAGGAAATTAGAGGGATTCCACCGAACTTAATGTTTTTTGGTGCAAGAAACTGTGTATCCTTGACTTCCTCGAGTAAAAGCATGCTTTTAAATCAGGAACTGTATGAGGCTCGAAGAACCCAGTTTGTGTTTAAAGGAGCAAGTATACCAGAGTGGTTCGATCAGCAAAGCAGTGGGCATTCAAGTTCTTTCTGGTTTCGTAATAAATTCCCTGCCAAAATTCTTTGTCTTCTTATTGCACCTGTGTCGGGTGTCGGGTTTCGTTTCGTTAAACCCAACCCCAAGGTGTTCATCAATGGAAAATTTCAAGAATTTGAGCCCCGTGTGACGGACCGTATAAAAAGTATGTTGAAATTGGATCATACATATATCTTTGATCTCAAAGAGATACCTTTCAAAAATAATTATCTGTCTGAAGAAGTGGCTAGGGAAAAGGAATGGAACCATGTGGAGGTTAGATATGAAAGTGTGTTAGAGTATGAAAAAGAAAAGAAAGAAGAAGGTGTGTTAGACTTAGAGAGCTCACTCATTAAAGCAACTGGAATCCATATATTCAGAGAAGAAGGCAGTACGGATGAAGATATTCGATTTGATGATCCATATCTCAGCAGCTCTGCATCAGAAAGCCCCTCCTTCCTACAAACCATAGCTTTGGGGACACGCAAGTTTTCCATTGCTTTTTTCTTATTTTTTTCATGTTTTTTATTTCATTATTTTGGTTTCAGTTGTCAAAAATTCACTTAA 3330 0.3919 MAATTRSLASIYDVFLSFRGEDTRHGFTGNLYKALDNRGIYTFIDDQELPRGDEITPALSKAIQESRIAIIVLSQNYASSSFCLDELVTILHCKSEGLLVIPVFYKVDPSDVRHQKGSYGEAMAKHQKRFKAKKEKLQKWRMALKQVADLSGYHFEDGDAYEYKFIGSIVEELSRKISRASLHVADYPVGLESQVTKVMKLLDVASHDVVHIIGIHGMGGLGKTTLAREVYNLIALPFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDITLTSWQEGASMIQHRLRRKKVLLILDDVDKREQLKAIVGRPDWFGPGSRVIVTTRDKHLLKYHGVERTYEVKVLNHNAALQLLTRNAFKRGKIDPSYEDVLYRVVTYASGLPLALEVIGSNLFEKTVTEWESALEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCFKGYKWTEVDDILGALYGNCKKHHLGVLVEKSLIKLDLFDNVEMHDLIQDMGREIERQRSPEEPGKCKRLWLPKDIIQVLKHNTGTSKIEIICLNFSISHKEETVEWSGNAFVKMENLKILIIRNGKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFDPINLVICKLPDSSITSFEFHGPSKKLGHLTVLNFDGCKFLTQIPDVSDLPNLKELSFKKCESLVAVDDSIGFLNKLKKLSAYGCSKLTSFPPLNLTSLETLELSHCSSLEYFPEILGEMENIERLELNGLPIKELPFSFQNLIGLRLLTLWNCGIVQLRCSLAMMPNLFQFQIEKCNRWQWVESDEGEEKVGSIISSEARFGTHSFSAKNCNLCDDFFLTGFKRFAHVGDLNLSGNNFTILPEFFKELQFLHSLDVNDCQHLQEIRGIPPNLMFFGARNCVSLTSSSKSMLLNQELYEARRTQFVFKGASIPEWFDQQSSGHSSSFWFRNKFPAKILCLLIAPVSGVGFRFVKPNPKVFINGKFQEFEPRVTDRIKSMLKLDHTYIFDLKEIPFKNNYLSEEVAREKEWNHVEVRYESVLEYEKEKKEEGVLDLESSLIKATGIHIFREEGSTDEDIRFDDPYLSSSASESPSFLQTIALGTRKFSIAFFLFFSCFLFHYFGFSCQKFT* 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1721 1109 Pfam NB-ARC domain 192 412 IPR002182 GO:0043531
Gso16g1721 1109 Gene3D - 346 430 IPR042197 -
Gso16g1721 1109 SMART till_3 11 150 IPR000157 GO:0007165
Gso16g1721 1109 Gene3D Ribonuclease Inhibitor 537 693 IPR032675 -
Gso16g1721 1109 Gene3D Ribonuclease Inhibitor 694 797 IPR032675 -
Gso16g1721 1109 Gene3D Ribonuclease Inhibitor 803 900 IPR032675 -
Gso16g1721 1109 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 918 IPR044974 GO:0006952
Gso16g1721 1109 Gene3D - 177 340 IPR027417 -
Gso16g1721 1109 Pfam TIR domain 12 176 IPR000157 GO:0007165
Gso16g1721 1109 SUPERFAMILY "Winged helix" DNA-binding domain 416 524 IPR036390 -
Gso16g1721 1109 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Gso16g1721 1109 Gene3D - 11 176 IPR035897 -
Gso16g1721 1109 SUPERFAMILY Toll/Interleukin receptor TIR domain 10 153 IPR035897 -
Gso16g1721 1109 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 440 IPR027417 -
Gso16g1721 1109 SUPERFAMILY L domain-like 548 891 - -
Gso16g1721 1109 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1721 1109 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1721 1109 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1721 1109 PRINTS Disease resistance protein signature 693 709 - -
Gso16g1721 1109 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 918 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1721 Gso-Chr16 37756148 37760101 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1721 12 752 WRKY Transcription Factor Family AT4G12020 31.447 9.91e-81 288
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1721 - - gmx:106794133 1785.77