Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1719 ATGGCTGCAACAACACGTTCCCTTCCATTCATCTATGATGTGTTCCTCAGCTTCAGAGGGGAAGACACACGCTATGGTTTCACTGGCAATCTATACAGGGCTCTCTGTGAGAAGGGAATTCATACCTTCTTTGATGAAGAGAAGCTTCACGGTGGAGATGAAATAACACCTGCACTTTCGAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTCAAAACTATGCTTTTTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAACGTAGATCCTTCTGATCTCAGACACCAGAAAGGTAGTTATGGAGAAGCAATGACTAAGCATCAGAAAAGGTTCGAATCTAAGATGGAGAAGCTGCAGAAATGGAGGATGGCTTTGAAACAAGTAGCTGACTTGTCTGGCCATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATTGGGAGCATTGTTGAGGAGGTCTCTAGGAAGATTAATCGAGCTTCTTTACATGTTCCGGATTATCCAGTTGGTCTAGAGTCACAAGTGACAGACTTAATGAAGCTTTTGGATGTTGGATCAGATGATGTTGTCCATATCATAGGGATCCATGGGATGCGTGGGTTAGGAAAAACAACCCTTGCTCTAGCTGTTTATAATTTGATTGCTCTCCATTTTGACGAATCATGTTTTCTTCAAAATGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCCTTCTTTTAAAATTACTTGGTGAGAAGGACATCAACTTAACAAGTTGGCAAGAAGGAGCTTCAATGATTCAACATAGGCTCCGAAGAAAGAAGGTTCTCTTGATTTTAGACGATGCAGACAGGCACGAGCAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGGCATTGAAAGAACTTATGAGGTGAAGGTTTTGAATCACAATGCTGCTCTTCAATTGCTTACTTGGAATGCTTTCAGAAGAGAAAAAATTGATCCAAGTTATGAGCACGTCTTGAATCGTGTGGTAGCTTATGCTTCTGGCCTTCCACTGGCTTTGGAAGTCATAGGTTCCCACTTGTTTGAAAAAACAGTAGCAGAATGGGAATATGCTGTGGAACATTATAGTAGAATTCCCATTGATGAAATCGTAGATATTCTAAAAGTAAGCTTTGATGCTACAAAGCAGGAAACACAGGGATATAAGTTCACAGTAATAAACAATGCACTGACAACCCCCGGTGGTGTGAGATTCCGTGACAAAATAGGAGCTGAATACGCAAACCGAACACTTGAGTTGGCCACCCAATTCGTATGGAGGATCTTTCAGCAAAAAAACCCTTCTGACAGAAAAAATGTGCAGAAGGTGAGCTTAGTCGTGGATGACATGGAGGGTATTGCATACACTATGAACAACGAGATTCACGTGAGTGCAAGATATGTTAATGGGTATAGTGGTGGGGATGTGAAAAGAGAGATCACAGGGGTGCTGTTTCATCAAGTTTGCTACGTTTGGCAGTGGTATGGGAATGGTGAGGCTCCTGGTGGATTAATTGGAGGTATTGCAGATTTTGTGAGGCTGAAGGCAAACTATGCAGCCAGTCATTGGAGAAAACCAGGGCAAGGACAGAGATGGGATGAGGGTTATGATATTACTGCTCATTTTTTGGATTATTGTGATTCTCTCAAAAGTGGGTTTGTGGCTCAACTTAACCAGTTGATGAGGACTGGTTATAGTGATCAGTTCTTCGTTCAGTTACTGGGAAAGCCAGTTGATCAGCTCTGGCGAGATTATAAGGCCCAGTATGGCAATCTAGCCTAA 1926 0.4174 MAATTRSLPFIYDVFLSFRGEDTRYGFTGNLYRALCEKGIHTFFDEEKLHGGDEITPALSKAIQESRIAITVLSQNYAFSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDLRHQKGSYGEAMTKHQKRFESKMEKLQKWRMALKQVADLSGHHFKDGDAYEYKFIGSIVEEVSRKINRASLHVPDYPVGLESQVTDLMKLLDVGSDDVVHIIGIHGMRGLGKTTLALAVYNLIALHFDESCFLQNVREESNKHGLKHLQSILLLKLLGEKDINLTSWQEGASMIQHRLRRKKVLLILDDADRHEQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHGIERTYEVKVLNHNAALQLLTWNAFRREKIDPSYEHVLNRVVAYASGLPLALEVIGSHLFEKTVAEWEYAVEHYSRIPIDEIVDILKVSFDATKQETQGYKFTVINNALTTPGGVRFRDKIGAEYANRTLELATQFVWRIFQQKNPSDRKNVQKVSLVVDDMEGIAYTMNNEIHVSARYVNGYSGGDVKREITGVLFHQVCYVWQWYGNGEAPGGLIGGIADFVRLKANYAASHWRKPGQGQRWDEGYDITAHFLDYCDSLKSGFVAQLNQLMRTGYSDQFFVQLLGKPVDQLWRDYKAQYGNLA* 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1719 641 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Gso16g1719 641 Gene3D - 11 176 IPR035897 -
Gso16g1719 641 Gene3D - 177 339 IPR027417 -
Gso16g1719 641 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 14 623 - -
Gso16g1719 641 Gene3D - 346 429 IPR042197 -
Gso16g1719 641 Pfam TIR domain 12 179 IPR000157 GO:0007165
Gso16g1719 641 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 623 IPR044974 GO:0006952
Gso16g1719 641 SMART AAA_5 209 347 IPR003593 -
Gso16g1719 641 SUPERFAMILY Toll/Interleukin receptor TIR domain 6 152 IPR035897 -
Gso16g1719 641 SMART till_3 11 150 IPR000157 GO:0007165
Gso16g1719 641 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 429 IPR027417 -
Gso16g1719 641 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1719 641 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1719 641 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1719 641 Pfam NB-ARC domain 193 414 IPR002182 GO:0043531
Gso16g1719 641 Pfam Peptidase of plants and bacteria 440 633 IPR007541 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1719 Gso-Chr16 37743569 37745884 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1719 12 393 WRKY Transcription Factor Family AT4G12020 27.532 1.50e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1719 - - gmx:100776464 1272.69