Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso16g1718 ATGGCTGCAACAACACGTTCCGGTGCATCCATCTACGATGTGTTCCTAAACTTCAGAGGGGGAGACACACGCTATGGTTTCACTGGCAATCTGTACAGGGCTCTTTGTGACAAGGGAATTCATTCCTTCTTTGACGAAAAGAAGCTTCACAGAGGAGAGGAAATAACACCTGCACTTTTGAAGGCAATTCAAGAGTCCAGGATTGCTATTACTGTGCTTTCTAAAAACTATGCTTCTTCCTCATTTTGTTTAGATGAACTTGTAACCATCCTTCACTGCAAGAGTGAAGGGCTGTTGGTTATACCGGTCTTTTACAACGTAGATCCTTCTGATGTCAGACACCAGAAAGGTAGTTATGGGGTAGAAATGGCTAAGCATCAGAAGAGGTTCAAAGCTAAGAAGGAGAAGCTGCAGAAATGGAGGATCGCTTTGAAACAAGTAGCTGACTTGTGTGGATATCATTTCAAAGATGGAGATGCATATGAATACAAGTTTATCCAGAGTATTGTTGAGCAGGTTTCTAGGGAGATTAATCGTGCTCCTTTACATGTTGCGGATTATCCAGTTGGTCTAGGGTCACAAGTGATAGAGGTAAGGAAGCTTTTGGATGTTGGATCCCATGATGTTGTCCACATCATAGGGATCCATGGAATGGGCGGGTTAGGAAAAACAACACTTGCTCTGGCAGTTTATAATTTGATTGCTCTCCGTTTTGATGAATCCTGTTTTCTTCAAAATGTGAGAGAAGAATCAAATAAACATGGGTTAAAACACCTTCAAAGCATCCTTCTTTCAAAATTACTTGGGGAGAAGGACATCACCTTAACAAGTTGGCAAGAAGGAGCTTCAATGATACAACATAGGCTCCAACGAAAGAAGGTTCTCTTGATTTTAGACGATGTTGATAAGCGCGAGCAATTAAAGGCTATTGTTGGAAGACCTGATTGGTTTGGTCCCGGTAGCAGAGTCATCATTACCACTCGGGACAAACATCTGCTAAAATATCATGAGGTTGAAAGAACCTATGAGGTGAAGGTTTTAAATCAGAGTGCTGCTCTTCAATTGCTTAAGTGGAATGCTTTTAAAAAAGAAAAAATTGATCCAAGTTATGAGGACGTCTTGAATCGTGTAGTAACTTATGCTTCTGGCCTTCCATTGGCTTTGGAAGTCATAGGTTCCAACTTGTTTGGAAAGACTGTAGCAGAATGGGAATCTGCTATGGAACATTATAAAAGAATTCCCAGTGATGAAATCCTAGAGATTCTAAAAGTAAGCTTTGATGCTTTGGGGGAAGAACAAAAGAATGTTTTTCTTGACATTGCTTGTTGCTTCAGAGGGTATAAATGGACAGAGGTTGATGATATACTCCGTGCTCTTTATGGTAACTGCAAGAAGCATCATATTGGGGTGTTGGTTGAAAAATCTCTGATAAAGCTTAACTGTTATGGTACTGATACTGTTGAAATGCACGACTTGATTCAGGACATGGGTAGAGAAATTGAGCGGCAGAGATCACCAGAAGAGCCAGGGAAGTGCAAGAGATTATGGTTACCAAAAGATATAATTCAAGTTTTTAAAGACAACACCGGAACTAGTAAAATTGAAATCATATGCCTGGATTCCTCCATATCTGACAAAGAAGAAACAGTGGAATGGAATGAAAACGCCTTCATGAAGATGGAAAACCTTAAAATACTTATTATTAGAAATGACAAATTTTCCAAAGGTCCCAATTATTTTCCAGAAGGTTTGAGAGTACTGGAATGGCACAGATATCCTTCAAATTGTTTACCATCTAACTTTCATCCGAACAATCTTGTTATATGCAAGTTACCTGACAGTTGTATGACGTCGTTTGAGTTCCATGGCCCATCGAAGAAGTTCGGGCATCTAACAGTTTTGAAGTTTGACAACTGCAAATTTTTAACACAGATACCTGATGTATCTGATCTCCCAAATTTGAGGGAGCTTTCATTTGAAGAGTGTGAGAGTTTAGTTGCAGTTGATGACTCAATTGGTTTTCTGAATAAACTTAAAAAATTGAGTGCGTATGGTTGCAGCAAGCTTAAGAGTTTTCCGCCTCTCAACTTGACCTCTCTTCAAACACTTCAACTTTCTCAATGTTCCAGTCTTGAATATTTTCCAGAAATAATAGGAGAGATGGAAAACATAAAGCATCTTTTTTTGTATGGCCTTCCCATAAAAGAATTGTCATTTTCATTTCAAAATCTTATTGGACTCCGTTGGTTAACCCTGAGGAGCTGTGGAATTGTTAAGTTACCTTGTAGCTTAGCGATGATGCCCGAACTGTTTGAATTCCATATGGAATATTGCAACAGGTGGCAATGGGTAGAATCGGAAGAAGGTGAAAAAAAAGTGGGCTCAATACCATCTTCAAAGGCACATCGGTTTTCGGCCAAGGATTGCAATCTATGTGATGATTTTTTTTTAACAGGTTTCAAGACCTTTGCTCGTGTAGGACATTTAAATCTGTCGGGGAATAATTTCACAATCCTTCCTGAATTCTTCAAAGAATTGCAATTATTAAGATCACTTATGGTGAGTGATTGCGAGCATCTTCAGGAAATTAGAGGTCTTCCACCAAACTTAGAGTATTTCGATGCAAGAAACTGTGCATCCTTGACTTCCTCGAGTAAAAACATGCTTTTAAATCAGAAACTGCATGAGGCTGGAGGAACCAATTTTATGTTTACAGGAACAAGTATACCAGAGTGGTTCGATCAGCAAAGCAGTGGACCTTCAAGTTCTTTCTGGTTTCGTAATAAATTCCCTGCCAAACTTCTTTGTCTTCTTATTGCACCTGTGTCTACTGGGATTGTTGTCCTTAATCCAAAGGTGTTCATCAATGGCAAATTTCAAGAAATTCGGCCCTATTTTGGAAGACACGAGATAAAAAGTAGGTTGAACTTGGATCATACATATATCTTTGATCTCCAAGCGTCTGCTTTCATAAATAATAATCGGTTTGAAGAAATGGCTAGGGAAAAGGAATGGAACCATGTGGAGGTTAGATATCAAAGTGTGTTAGCCTATGAAAAAGAAAAGAGAGAAGAAGGTGTCTTAGACTTAGAGAGCTCAATCATTAAGGCAAGTGGAATCCATATATTCAAAGAAAGCAGTATGGAGGAAGATATTCGATTTGATGATCCTTATCTCAGCAGTTCTGCATCAGAAAGCCCATCGTTGCTACAAACCATAGCCTTTGGGACACGTTCCATAGCTTTTTTCTTATTTTTTTCATGTTTTTTATTTTATTATTTTTGTTTCAGTTGTCAAAAATTCACTTAA 3309 0.3874 MAATTRSGASIYDVFLNFRGGDTRYGFTGNLYRALCDKGIHSFFDEKKLHRGEEITPALLKAIQESRIAITVLSKNYASSSFCLDELVTILHCKSEGLLVIPVFYNVDPSDVRHQKGSYGVEMAKHQKRFKAKKEKLQKWRIALKQVADLCGYHFKDGDAYEYKFIQSIVEQVSREINRAPLHVADYPVGLGSQVIEVRKLLDVGSHDVVHIIGIHGMGGLGKTTLALAVYNLIALRFDESCFLQNVREESNKHGLKHLQSILLSKLLGEKDITLTSWQEGASMIQHRLQRKKVLLILDDVDKREQLKAIVGRPDWFGPGSRVIITTRDKHLLKYHEVERTYEVKVLNQSAALQLLKWNAFKKEKIDPSYEDVLNRVVTYASGLPLALEVIGSNLFGKTVAEWESAMEHYKRIPSDEILEILKVSFDALGEEQKNVFLDIACCFRGYKWTEVDDILRALYGNCKKHHIGVLVEKSLIKLNCYGTDTVEMHDLIQDMGREIERQRSPEEPGKCKRLWLPKDIIQVFKDNTGTSKIEIICLDSSISDKEETVEWNENAFMKMENLKILIIRNDKFSKGPNYFPEGLRVLEWHRYPSNCLPSNFHPNNLVICKLPDSCMTSFEFHGPSKKFGHLTVLKFDNCKFLTQIPDVSDLPNLRELSFEECESLVAVDDSIGFLNKLKKLSAYGCSKLKSFPPLNLTSLQTLQLSQCSSLEYFPEIIGEMENIKHLFLYGLPIKELSFSFQNLIGLRWLTLRSCGIVKLPCSLAMMPELFEFHMEYCNRWQWVESEEGEKKVGSIPSSKAHRFSAKDCNLCDDFFLTGFKTFARVGHLNLSGNNFTILPEFFKELQLLRSLMVSDCEHLQEIRGLPPNLEYFDARNCASLTSSSKNMLLNQKLHEAGGTNFMFTGTSIPEWFDQQSSGPSSSFWFRNKFPAKLLCLLIAPVSTGIVVLNPKVFINGKFQEIRPYFGRHEIKSRLNLDHTYIFDLQASAFINNNRFEEMAREKEWNHVEVRYQSVLAYEKEKREEGVLDLESSIIKASGIHIFKESSMEEDIRFDDPYLSSSASESPSLLQTIAFGTRSIAFFLFFSCFLFYYFCFSCQKFT* 1103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso16g1718 1102 Gene3D - 9 177 IPR035897 -
Gso16g1718 1102 SMART till_3 11 150 IPR000157 GO:0007165
Gso16g1718 1102 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 916 IPR044974 GO:0006952
Gso16g1718 1102 SUPERFAMILY "Winged helix" DNA-binding domain 416 526 IPR036390 -
Gso16g1718 1102 SUPERFAMILY Toll/Interleukin receptor TIR domain 8 153 IPR035897 -
Gso16g1718 1102 Gene3D - 346 430 IPR042197 -
Gso16g1718 1102 Gene3D Ribonuclease Inhibitor 696 915 IPR032675 -
Gso16g1718 1102 Gene3D Ribonuclease Inhibitor 549 695 IPR032675 -
Gso16g1718 1102 SUPERFAMILY L domain-like 551 893 - -
Gso16g1718 1102 Pfam NB-ARC domain 207 412 IPR002182 GO:0043531
Gso16g1718 1102 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 440 IPR027417 -
Gso16g1718 1102 Gene3D - 178 341 IPR027417 -
Gso16g1718 1102 CDD AAA 192 329 - -
Gso16g1718 1102 PRINTS Disease resistance protein signature 212 227 - -
Gso16g1718 1102 PRINTS Disease resistance protein signature 288 302 - -
Gso16g1718 1102 PRINTS Disease resistance protein signature 381 395 - -
Gso16g1718 1102 PRINTS Disease resistance protein signature 695 711 - -
Gso16g1718 1102 ProSiteProfiles TIR domain profile. 10 177 IPR000157 GO:0007165
Gso16g1718 1102 Pfam TIR domain 12 178 IPR000157 GO:0007165
Gso16g1718 1102 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS) 15 916 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso16g1718 Gso-Chr16 37725583 37729646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso16g1718 7 778 WRKY Transcription Factor Family AT4G12020 31.281 1.26e-83 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso16g1718 - - gmx:100817954 2137.84